commit 540f7e0858be4a5f11aa2afccf4cf31c1c4482db
parent 68e1fd461a36c20f2154e3abbca24e85ecef67b2
Author: Ivan Gankevich <igankevich@ya.ru>
Date: Mon, 25 Sep 2017 10:46:15 +0300
Add common org-mode setup file.
Diffstat:
| arma-thesis-ru.org | | | 260 | +------------------------------------------------------------------------------ |
| arma-thesis.org | | | 1204 | +------------------------------------------------------------------------------ |
| setup.org | | | 1247 | +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ |
3 files changed, 1250 insertions(+), 1461 deletions(-)
diff --git a/arma-thesis-ru.org b/arma-thesis-ru.org
@@ -1,270 +1,14 @@
-# Local Variables:
-# org-ref-default-bibliography ("bib/refs.bib")
-# org-latex-image-default-width nil
-# org-latex-caption-above nil
-# org-latex-hyperref-template "\\hypersetup{\n pdfauthor={%a},\n pdftitle={%t},\n pdfkeywords={%k},\n pdfsubject={%d},\n pdfcreator={%c},\n pdflang={%L},\n unicode={true}\n}\n\\setdefaultlanguage{%l}\n"
-# org-export-latex-tables-hline "\\midrule"
-# org-export-latex-tables-tstart "\\toprule"
-# org-export-latex-tables-tend "\\bottomrule"
-# eval: (add-to-list 'org-latex-classes '("gost" "\\documentclass{gost} [DEFAULT-PACKAGES] [PACKAGES] [EXTRA]" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
-# End:
-
#+TITLE: Высокопроизводительная модель морского волнения для программ динамики морских объектов
#+AUTHOR: Иван Ганкевич
#+DATE: Санкт-Петербург, 2017
#+LANGUAGE: ru
-#+LATEX_CLASS: gost
-#+LATEX_CLASS_OPTIONS: [hidelinks,fontsize=14pt,paper=a4,pagesize,DIV=calc,noenddot]
-#+LATEX_HEADER_EXTRA: \input{preamble}
+#+SETUPFILE: setup.org
#+LATEX_HEADER_EXTRA: \organization{Санкт-Петербургский государственный университет}
#+LATEX_HEADER_EXTRA: \manuscript{на правах рукописи}
#+LATEX_HEADER_EXTRA: \degree{Диссертация на соискание ученой степени\\кандидата физико-математических наук}
#+LATEX_HEADER_EXTRA: \speciality{Специальность 05.13.18\\Математическое моделирование, численные методы и комплексы программ}
#+LATEX_HEADER_EXTRA: \supervisor{Научный руководитель\\д.т.н Дегтярев Александр Борисович}
#+LATEX_HEADER_EXTRA: \newcites{published}{Список опубликованных по теме диссертации работ}
-#+OPTIONS: todo:nil title:nil ':t H:5
-#+STARTUP: indent
-#+PROPERTY: header-args:R :results graphics :exports results
-
-* Config :noexport:
-** Produce data for Q-Q and ACF plots
-#+begin_src sh :exports none :results verbatim
-root=$(pwd)
-for testname in propagating_wave standing_wave
-do
- wd=$root/build/$testname
- rm -rf $wd
- mkdir -p $wd
- cd $wd
- arma -c $root/config/$testname.arma 2>&1
-done
-#+end_src
-
-#+RESULTS:
-#+begin_example
-Input file = /home/igankevich/workspace/phd-diss/config/propagating_wave.arma
-ACF grid size = (20,10,10)
-ACF grid patch size = (0.526316,0.555556,0.555556)
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-AR order = (10,10,10)
-Do least squares = 0
-ACF function = propagating_wave
-Model = MA
-MA algorithm = fixed_point_iteration
-Verification scheme = manual
-ACF variance = 5
-fixed_point_iteration:Iteration=0, var_wn=2.70831
-fixed_point_iteration:Iteration=1, var_wn=1.93791
-fixed_point_iteration:Iteration=2, var_wn=1.54801
-fixed_point_iteration:Iteration=3, var_wn=1.31202
-fixed_point_iteration:Iteration=4, var_wn=1.15328
-fixed_point_iteration:Iteration=5, var_wn=1.0386
-fixed_point_iteration:Iteration=6, var_wn=0.951442
-fixed_point_iteration:Iteration=7, var_wn=0.882674
-fixed_point_iteration:Iteration=8, var_wn=0.82688
-fixed_point_iteration:Iteration=9, var_wn=0.780623
-fixed_point_iteration:Iteration=10, var_wn=0.74161
-fixed_point_iteration:Iteration=11, var_wn=0.708244
-fixed_point_iteration:Iteration=12, var_wn=0.679374
-fixed_point_iteration:Iteration=13, var_wn=0.654145
-fixed_point_iteration:Iteration=14, var_wn=0.63191
-fixed_point_iteration:Iteration=15, var_wn=0.612168
-fixed_point_iteration:Iteration=16, var_wn=0.594523
-fixed_point_iteration:Iteration=17, var_wn=0.578663
-fixed_point_iteration:Iteration=18, var_wn=0.564333
-fixed_point_iteration:Iteration=19, var_wn=0.551325
-fixed_point_iteration:Iteration=20, var_wn=0.539469
-fixed_point_iteration:Iteration=21, var_wn=0.528623
-fixed_point_iteration:Iteration=22, var_wn=0.518666
-fixed_point_iteration:Iteration=23, var_wn=0.509497
-fixed_point_iteration:Iteration=24, var_wn=0.50103
-fixed_point_iteration:Iteration=25, var_wn=0.493191
-fixed_point_iteration:Iteration=26, var_wn=0.485916
-fixed_point_iteration:Iteration=27, var_wn=0.479148
-fixed_point_iteration:Iteration=28, var_wn=0.472841
-fixed_point_iteration:Iteration=29, var_wn=0.466951
-fixed_point_iteration:Iteration=30, var_wn=0.461442
-fixed_point_iteration:Iteration=31, var_wn=0.456279
-fixed_point_iteration:Iteration=32, var_wn=0.451435
-fixed_point_iteration:Iteration=33, var_wn=0.446882
-fixed_point_iteration:Iteration=34, var_wn=0.442597
-fixed_point_iteration:Iteration=35, var_wn=0.43856
-fixed_point_iteration:Iteration=36, var_wn=0.434752
-fixed_point_iteration:Iteration=37, var_wn=0.431155
-fixed_point_iteration:Iteration=38, var_wn=0.427755
-fixed_point_iteration:Iteration=39, var_wn=0.424538
-fixed_point_iteration:Iteration=40, var_wn=0.42149
-fixed_point_iteration:Iteration=41, var_wn=0.418601
-fixed_point_iteration:Iteration=42, var_wn=0.415859
-fixed_point_iteration:Iteration=43, var_wn=0.413256
-fixed_point_iteration:Iteration=44, var_wn=0.410782
-fixed_point_iteration:Iteration=45, var_wn=0.40843
-fixed_point_iteration:Iteration=46, var_wn=0.406191
-fixed_point_iteration:Iteration=47, var_wn=0.404059
-fixed_point_iteration:Iteration=48, var_wn=0.402029
-fixed_point_iteration:Iteration=49, var_wn=0.400092
-fixed_point_iteration:Iteration=50, var_wn=0.398246
-fixed_point_iteration:Iteration=51, var_wn=0.396483
-fixed_point_iteration:Iteration=52, var_wn=0.3948
-fixed_point_iteration:Iteration=53, var_wn=0.393193
-fixed_point_iteration:Iteration=54, var_wn=0.391656
-fixed_point_iteration:Iteration=55, var_wn=0.390188
-fixed_point_iteration:Iteration=56, var_wn=0.388782
-fixed_point_iteration:Iteration=57, var_wn=0.387438
-fixed_point_iteration:Iteration=58, var_wn=0.386151
-fixed_point_iteration:Iteration=59, var_wn=0.384918
-fixed_point_iteration:Iteration=60, var_wn=0.383738
-fixed_point_iteration:Iteration=61, var_wn=0.382606
-fixed_point_iteration:Iteration=62, var_wn=0.381522
-fixed_point_iteration:Iteration=63, var_wn=0.380482
-fixed_point_iteration:Iteration=64, var_wn=0.379485
-fixed_point_iteration:Iteration=65, var_wn=0.378528
-fixed_point_iteration:Iteration=66, var_wn=0.37761
-fixed_point_iteration:Iteration=67, var_wn=0.376729
-fixed_point_iteration:Iteration=68, var_wn=0.375882
-fixed_point_iteration:Iteration=69, var_wn=0.37507
-fixed_point_iteration:Iteration=70, var_wn=0.374289
-fixed_point_iteration:Iteration=71, var_wn=0.373539
-fixed_point_iteration:Iteration=72, var_wn=0.372818
-fixed_point_iteration:Iteration=73, var_wn=0.372126
-fixed_point_iteration:Iteration=74, var_wn=0.37146
-fixed_point_iteration:Iteration=75, var_wn=0.37082
-fixed_point_iteration:Iteration=76, var_wn=0.370204
-fixed_point_iteration:Iteration=77, var_wn=0.369612
-fixed_point_iteration:Iteration=78, var_wn=0.369042
-fixed_point_iteration:Iteration=79, var_wn=0.368494
-fixed_point_iteration:Iteration=80, var_wn=0.367966
-fixed_point_iteration:Iteration=81, var_wn=0.367458
-fixed_point_iteration:Iteration=82, var_wn=0.366969
-fixed_point_iteration:Iteration=83, var_wn=0.366499
-fixed_point_iteration:Iteration=84, var_wn=0.366046
-fixed_point_iteration:Iteration=85, var_wn=0.36561
-fixed_point_iteration:Iteration=86, var_wn=0.365189
-fixed_point_iteration:Iteration=87, var_wn=0.364785
-fixed_point_iteration:Iteration=88, var_wn=0.364395
-fixed_point_iteration:Iteration=89, var_wn=0.364019
-fixed_point_iteration:Iteration=90, var_wn=0.363657
-fixed_point_iteration:Iteration=91, var_wn=0.363309
-fixed_point_iteration:Iteration=92, var_wn=0.362973
-fixed_point_iteration:Iteration=93, var_wn=0.362649
-fixed_point_iteration:Iteration=94, var_wn=0.362337
-fixed_point_iteration:Iteration=95, var_wn=0.362036
-fixed_point_iteration:Iteration=96, var_wn=0.361746
-fixed_point_iteration:Iteration=97, var_wn=0.361466
-fixed_point_iteration:Iteration=98, var_wn=0.361197
-fixed_point_iteration:Iteration=99, var_wn=0.360937
-fixed_point_iteration:Iteration=100, var_wn=0.360686
-fixed_point_iteration:Iteration=101, var_wn=0.360444
-fixed_point_iteration:Iteration=102, var_wn=0.360211
-fixed_point_iteration:Iteration=103, var_wn=0.359986
-fixed_point_iteration:Iteration=104, var_wn=0.359769
-fixed_point_iteration:Iteration=105, var_wn=0.35956
-fixed_point_iteration:Iteration=106, var_wn=0.359358
-fixed_point_iteration:Iteration=107, var_wn=0.359163
-fixed_point_iteration:Iteration=108, var_wn=0.358975
-fixed_point_iteration:Iteration=109, var_wn=0.358794
-fixed_point_iteration:Iteration=110, var_wn=0.358619
-fixed_point_iteration:Iteration=111, var_wn=0.35845
-fixed_point_iteration:Iteration=112, var_wn=0.358288
-fixed_point_iteration:Iteration=113, var_wn=0.35813
-fixed_point_iteration:Iteration=114, var_wn=0.357979
-fixed_point_iteration:Iteration=115, var_wn=0.357832
-fixed_point_iteration:Iteration=116, var_wn=0.357691
-fixed_point_iteration:Iteration=117, var_wn=0.357555
-fixed_point_iteration:Iteration=118, var_wn=0.357423
-fixed_point_iteration:Iteration=119, var_wn=0.357296
-fixed_point_iteration:Iteration=120, var_wn=0.357173
-fixed_point_iteration:Iteration=121, var_wn=0.357055
-fixed_point_iteration:Iteration=122, var_wn=0.356941
-fixed_point_iteration:Iteration=123, var_wn=0.356831
-fixed_point_iteration:Iteration=124, var_wn=0.356724
-fixed_point_iteration:Iteration=125, var_wn=0.356621
-fixed_point_iteration:Iteration=126, var_wn=0.356522
-fixed_point_iteration:Iteration=127, var_wn=0.356426
-fixed_point_iteration:Iteration=128, var_wn=0.356334
-fixed_point_iteration:Iteration=129, var_wn=0.356244
-fixed_point_iteration:Iteration=130, var_wn=0.356158
-fixed_point_iteration:Iteration=131, var_wn=0.356075
-fixed_point_iteration:Iteration=132, var_wn=0.355994
-fixed_point_iteration:Iteration=133, var_wn=0.355917
-fixed_point_iteration:Iteration=134, var_wn=0.355842
-fixed_point_iteration:Iteration=135, var_wn=0.355769
-fixed_point_iteration:Iteration=136, var_wn=0.355699
-fixed_point_iteration:Iteration=137, var_wn=0.355632
-fixed_point_iteration:Iteration=138, var_wn=0.355567
-fixed_point_iteration:Iteration=139, var_wn=0.355504
-fixed_point_iteration:Iteration=140, var_wn=0.355443
-fixed_point_iteration:Iteration=141, var_wn=0.355384
-fixed_point_iteration:Iteration=142, var_wn=0.355327
-fixed_point_iteration:Iteration=143, var_wn=0.355273
-fixed_point_iteration:Iteration=144, var_wn=0.35522
-fixed_point_iteration:Iteration=145, var_wn=0.355169
-fixed_point_iteration:Iteration=146, var_wn=0.355119
-fixed_point_iteration:Iteration=147, var_wn=0.355072
-fixed_point_iteration:Iteration=148, var_wn=0.355026
-fixed_point_iteration:Iteration=149, var_wn=0.354981
-fixed_point_iteration:Iteration=150, var_wn=0.354938
-fixed_point_iteration:Iteration=151, var_wn=0.354897
-fixed_point_iteration:Iteration=152, var_wn=0.354856
-fixed_point_iteration:Iteration=153, var_wn=0.354818
-fixed_point_iteration:Iteration=154, var_wn=0.35478
-fixed_point_iteration:Iteration=155, var_wn=0.354744
-fixed_point_iteration:Iteration=156, var_wn=0.354709
-fixed_point_iteration:Iteration=157, var_wn=0.354676
-fixed_point_iteration:Iteration=158, var_wn=0.354643
-fixed_point_iteration:Iteration=159, var_wn=0.354612
-fixed_point_iteration:Iteration=160, var_wn=0.354581
-fixed_point_iteration:Iteration=161, var_wn=0.354552
-fixed_point_iteration:Iteration=162, var_wn=0.354524
-fixed_point_iteration:Iteration=163, var_wn=0.354496
-fixed_point_iteration:Iteration=164, var_wn=0.35447
-fixed_point_iteration:Iteration=165, var_wn=0.354444
-fixed_point_iteration:Iteration=166, var_wn=0.35442
-fixed_point_iteration:Iteration=167, var_wn=0.354396
-fixed_point_iteration:Iteration=168, var_wn=0.354373
-fixed_point_iteration:Iteration=169, var_wn=0.35435
-fixed_point_iteration:Iteration=170, var_wn=0.354329
-fixed_point_iteration:Iteration=171, var_wn=0.354308
-fixed_point_iteration:Iteration=172, var_wn=0.354288
-fixed_point_iteration:Iteration=173, var_wn=0.354269
-fixed_point_iteration:Iteration=174, var_wn=0.35425
-fixed_point_iteration:Iteration=175, var_wn=0.354232
-fixed_point_iteration:Iteration=176, var_wn=0.354214
-fixed_point_iteration:Iteration=177, var_wn=0.354198
-fixed_point_iteration:Iteration=178, var_wn=0.354181
-fixed_point_iteration:Iteration=179, var_wn=0.354165
-fixed_point_iteration:Iteration=180, var_wn=0.35415
-fixed_point_iteration:Iteration=181, var_wn=0.354136
-fixed_point_iteration:Iteration=182, var_wn=0.354121
-fixed_point_iteration:Iteration=183, var_wn=0.354108
-fixed_point_iteration:Iteration=184, var_wn=0.354094
-fixed_point_iteration:Iteration=185, var_wn=0.354082
-fixed_point_iteration:Iteration=186, var_wn=0.354069
-fixed_point_iteration:Iteration=187, var_wn=0.354057
-fixed_point_iteration:Iteration=188, var_wn=0.354046
-fixed_point_iteration:Iteration=189, var_wn=0.354034
-fixed_point_iteration:Iteration=190, var_wn=0.354024
-fixed_point_iteration:Iteration=191, var_wn=0.354013
-fixed_point_iteration:Iteration=192, var_wn=0.354003
-fixed_point_iteration:Iteration=193, var_wn=0.353994
-WN variance = 0.353994
-Input file = /home/igankevich/workspace/phd-diss/config/standing_wave.arma
-ACF grid size = (10,10,10)
-ACF grid patch size = (0.277778,0.555556,0.555556)
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-AR order = (7,7,7)
-Do least squares = 0
-ACF function = standing_wave
-Model = AR
-MA algorithm = fixed_point_iteration
-Verification scheme = manual
-ACF variance = 5
-WN variance = 0.00261323
-Zeta size = (193,33,33)
-NaN: 29, -nan, 1.798e+36, -1.04284e+38, inf, -1.798e+36, -1.798e+36
-#+end_example
* Введение
**** Актуальность темы.
@@ -1653,7 +1397,7 @@ source(file.path("R", "common.R"))
arma.plot_ramp_up_interval(label="Интервал разгона")
#+end_src
-#+caption: Интевал разгона в начале оси \(OX\) реализации.
+#+caption: Интервал разгона в начале оси \(OX\) реализации.
#+label: fig-ramp-up-interval
#+RESULTS: fig-ramp-up-interval
[[file:build/ramp-up-interval-ru.pdf]]
diff --git a/arma-thesis.org b/arma-thesis.org
@@ -1,1216 +1,14 @@
-# Local Variables:
-# org-latex-image-default-width nil
-# org-latex-caption-above nil
-# org-latex-hyperref-template "\\hypersetup{\n pdfauthor={%a},\n pdftitle={%t},\n pdfkeywords={%k},\n pdfsubject={%d},\n pdfcreator={%c},\n pdflang={%L},\n unicode={true}\n}\n\\setdefaultlanguage{%l}\n"
-# org-export-latex-tables-hline "\\midrule"
-# org-export-latex-tables-tstart "\\toprule"
-# org-export-latex-tables-tend "\\bottomrule"
-# eval: (add-to-list 'org-latex-classes '("gost" "\\documentclass{gost} [DEFAULT-PACKAGES] [PACKAGES] [EXTRA]" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
-# End:
-
#+TITLE: High-performance sea wave simulation model for studying marine object behaviour
#+AUTHOR: Ivan Gankevich
#+DATE: St. Petersburg, 2017
#+LANGUAGE: en
-#+LATEX_CLASS: gost
-#+LATEX_CLASS_OPTIONS: [hidelinks,fontsize=14pt,paper=a4,pagesize,DIV=calc,noenddot]
-#+LATEX_HEADER_EXTRA: \input{preamble}
+#+SETUPFILE: setup.org
#+LATEX_HEADER_EXTRA: \organization{Saint Petersburg State University}
#+LATEX_HEADER_EXTRA: \manuscript{}
#+LATEX_HEADER_EXTRA: \degree{thesis for candidate of sciences degree}
#+LATEX_HEADER_EXTRA: \speciality{Speciality 05.13.18\\Mathematical modeling, numerical methods and programme complexes}
#+LATEX_HEADER_EXTRA: \supervisor{Supervisor\\Alexander Degtyarev}
#+LATEX_HEADER_EXTRA: \newcites{published}{Publications on the subject of thesis}
-#+OPTIONS: todo:nil title:nil ':t H:5
-#+STARTUP: indent
-#+PROPERTY: header-args:R :results graphics :exports results
-
-* Config :noexport:
-** Produce data for Q-Q, ACF and velocity potential plots
-#+begin_src sh :exports none :results verbatim
-root=$(pwd)
-for testname in \
- propagating_wave \
- standing_wave \
- plain_wave_linear_solver \
- plain_wave_high_amplitude_solver
-do
- wd=$root/build/$testname
- rm -rf $wd
- mkdir -p $wd
- cd $wd
- cp $root/config/mt.dat .
- arma -c $root/config/$testname.arma 2>&1
-done
-#+end_src
-
-#+RESULTS:
-#+begin_example
-Input file = /home/igankevich/workspace/arma-thesis/config/propagating_wave.arma
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = MA
-Verification scheme = manual
-MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
-ACF variance = 5
-fixed_point_iteration:Iteration=0, var_wn=2.70831
-fixed_point_iteration:Iteration=1, var_wn=1.93791
-fixed_point_iteration:Iteration=2, var_wn=1.54801
-fixed_point_iteration:Iteration=3, var_wn=1.31202
-fixed_point_iteration:Iteration=4, var_wn=1.15328
-fixed_point_iteration:Iteration=5, var_wn=1.0386
-fixed_point_iteration:Iteration=6, var_wn=0.951442
-fixed_point_iteration:Iteration=7, var_wn=0.882674
-fixed_point_iteration:Iteration=8, var_wn=0.82688
-fixed_point_iteration:Iteration=9, var_wn=0.780623
-fixed_point_iteration:Iteration=10, var_wn=0.74161
-fixed_point_iteration:Iteration=11, var_wn=0.708244
-fixed_point_iteration:Iteration=12, var_wn=0.679374
-fixed_point_iteration:Iteration=13, var_wn=0.654145
-fixed_point_iteration:Iteration=14, var_wn=0.63191
-fixed_point_iteration:Iteration=15, var_wn=0.612168
-fixed_point_iteration:Iteration=16, var_wn=0.594523
-fixed_point_iteration:Iteration=17, var_wn=0.578663
-fixed_point_iteration:Iteration=18, var_wn=0.564333
-fixed_point_iteration:Iteration=19, var_wn=0.551325
-fixed_point_iteration:Iteration=20, var_wn=0.539469
-fixed_point_iteration:Iteration=21, var_wn=0.528623
-fixed_point_iteration:Iteration=22, var_wn=0.518666
-fixed_point_iteration:Iteration=23, var_wn=0.509497
-fixed_point_iteration:Iteration=24, var_wn=0.50103
-fixed_point_iteration:Iteration=25, var_wn=0.493191
-fixed_point_iteration:Iteration=26, var_wn=0.485915
-fixed_point_iteration:Iteration=27, var_wn=0.479148
-fixed_point_iteration:Iteration=28, var_wn=0.472841
-fixed_point_iteration:Iteration=29, var_wn=0.466951
-fixed_point_iteration:Iteration=30, var_wn=0.461442
-fixed_point_iteration:Iteration=31, var_wn=0.456279
-fixed_point_iteration:Iteration=32, var_wn=0.451435
-fixed_point_iteration:Iteration=33, var_wn=0.446882
-fixed_point_iteration:Iteration=34, var_wn=0.442597
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-fixed_point_iteration:Iteration=186, var_wn=0.354069
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-fixed_point_iteration:Iteration=192, var_wn=0.354003
-fixed_point_iteration:Iteration=193, var_wn=0.353993
-WN variance = 0.353993
-Partition size = (34,13,13)
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-Input file = /home/igankevich/workspace/arma-thesis/config/standing_wave.arma
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = AR
-Verification scheme = manual
-AR model = order=(7,7,7),acf.shape=(10,10,10)
-ACF variance = 5
-WN variance = 0.00259511
-Partition size = (21,10,10)
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-Zeta size = (192,32,32)
-Input file = /home/igankevich/workspace/arma-thesis/config/plain_wave_linear_solver.arma
-Output grid size = (200,128,40)
-Output grid patch size = (1,0.0629921,0.205128)
-Model = plain_wave
-Verification scheme = manual
-Plain wave model = func=cos,amplitudes=[4],wavenumbers=[0.125],phases=[0],velocities=[0.5]
-Velocity potential solver name = N4arma8velocity13Linear_solverIdEE
-Velocity potential solver = wnmax=(0,0.25),depth=12,domain=from (10,-12) to (10,4) npoints (1,128)
-Input file = /home/igankevich/workspace/arma-thesis/config/plain_wave_high_amplitude_solver.arma
-Output grid size = (200,128,40)
-Output grid patch size = (1,0.0629921,0.205128)
-Model = plain_wave
-Verification scheme = manual
-Plain wave model = func=cos,amplitudes=[4],wavenumbers=[0.125],phases=[0],velocities=[0.5]
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=(0,0.25),depth=12,domain=from (10,-12) to (10,4) npoints (1,128)
-#+end_example
-** Produce NIT plots
-#+begin_src sh :exports none :results verbatim
-root=$(pwd)
-
-function generate_surface() {
- none=$1
- gcs=$2
- sn=$3
- testcase=$4
-
- wd=$root/build/$testcase
- rm -rf $wd
- mkdir -p $wd
- cd $wd
- cp $root/config/mt.dat .
-
- # run linear case
- arma -c $root/config/$none 2>&1
- cp -v zeta.csv zeta-none.csv
-
- # run Gram---Charlier case
- arma -c $root/config/$gcs 2>&1
- cp -v zeta.csv zeta-gramcharlier.csv
-
- # run skew normal case
- arma -c $root/config/$sn 2>&1
- cp -v zeta.csv zeta-skewnormal.csv
-}
-
-echo "NIT for propagating waves"
-generate_surface \
- nit-propagating-none \
- nit-propagating-gramcharlier \
- nit-propagating-skewnormal \
- nit-propagating
-
-echo "NIT for standing waves"
-generate_surface \
- nit-standing-none \
- nit-standing-gramcharlier \
- nit-standing-skewnormal \
- nit-standing
-#+end_src
-
-#+RESULTS:
-#+begin_example
-NIT for propagating waves
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-none
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = MA
-Verification scheme = manual
-MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = none
-ACF variance = 1
-fixed_point_iteration:Iteration=0, var_wn=0.541662
-fixed_point_iteration:Iteration=1, var_wn=0.387581
-fixed_point_iteration:Iteration=2, var_wn=0.309602
-fixed_point_iteration:Iteration=3, var_wn=0.262404
-fixed_point_iteration:Iteration=4, var_wn=0.230656
-fixed_point_iteration:Iteration=5, var_wn=0.207721
-fixed_point_iteration:Iteration=6, var_wn=0.190288
-fixed_point_iteration:Iteration=7, var_wn=0.176535
-fixed_point_iteration:Iteration=8, var_wn=0.165376
-fixed_point_iteration:Iteration=9, var_wn=0.156125
-fixed_point_iteration:Iteration=10, var_wn=0.148322
-fixed_point_iteration:Iteration=11, var_wn=0.141649
-fixed_point_iteration:Iteration=12, var_wn=0.135875
-fixed_point_iteration:Iteration=13, var_wn=0.130829
-fixed_point_iteration:Iteration=14, var_wn=0.126382
-fixed_point_iteration:Iteration=15, var_wn=0.122434
-fixed_point_iteration:Iteration=16, var_wn=0.118905
-fixed_point_iteration:Iteration=17, var_wn=0.115733
-fixed_point_iteration:Iteration=18, var_wn=0.112867
-fixed_point_iteration:Iteration=19, var_wn=0.110265
-fixed_point_iteration:Iteration=20, var_wn=0.107894
-fixed_point_iteration:Iteration=21, var_wn=0.105725
-fixed_point_iteration:Iteration=22, var_wn=0.103733
-fixed_point_iteration:Iteration=23, var_wn=0.101899
-fixed_point_iteration:Iteration=24, var_wn=0.100206
-fixed_point_iteration:Iteration=25, var_wn=0.0986382
-fixed_point_iteration:Iteration=26, var_wn=0.0971831
-fixed_point_iteration:Iteration=27, var_wn=0.0958297
-fixed_point_iteration:Iteration=28, var_wn=0.0945682
-fixed_point_iteration:Iteration=29, var_wn=0.0933903
-fixed_point_iteration:Iteration=30, var_wn=0.0922883
-fixed_point_iteration:Iteration=31, var_wn=0.0912558
-fixed_point_iteration:Iteration=32, var_wn=0.0902869
-fixed_point_iteration:Iteration=33, var_wn=0.0893763
-fixed_point_iteration:Iteration=34, var_wn=0.0885194
-fixed_point_iteration:Iteration=35, var_wn=0.087712
-fixed_point_iteration:Iteration=36, var_wn=0.0869503
-fixed_point_iteration:Iteration=37, var_wn=0.086231
-fixed_point_iteration:Iteration=38, var_wn=0.085551
-fixed_point_iteration:Iteration=39, var_wn=0.0849075
-fixed_point_iteration:Iteration=40, var_wn=0.0842979
-fixed_point_iteration:Iteration=41, var_wn=0.0837201
-fixed_point_iteration:Iteration=42, var_wn=0.0831718
-fixed_point_iteration:Iteration=43, var_wn=0.0826511
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-fixed_point_iteration:Iteration=45, var_wn=0.0816859
-fixed_point_iteration:Iteration=46, var_wn=0.0812382
-fixed_point_iteration:Iteration=47, var_wn=0.0808119
-fixed_point_iteration:Iteration=48, var_wn=0.0804057
-fixed_point_iteration:Iteration=49, var_wn=0.0800185
-fixed_point_iteration:Iteration=50, var_wn=0.0796491
-fixed_point_iteration:Iteration=51, var_wn=0.0792966
-fixed_point_iteration:Iteration=52, var_wn=0.07896
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-fixed_point_iteration:Iteration=55, var_wn=0.0780375
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-fixed_point_iteration:Iteration=60, var_wn=0.0767475
-fixed_point_iteration:Iteration=61, var_wn=0.0765213
-fixed_point_iteration:Iteration=62, var_wn=0.0763044
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-fixed_point_iteration:Iteration=66, var_wn=0.075522
-fixed_point_iteration:Iteration=67, var_wn=0.0753457
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-fixed_point_iteration:Iteration=69, var_wn=0.0750139
-fixed_point_iteration:Iteration=70, var_wn=0.0748578
-fixed_point_iteration:Iteration=71, var_wn=0.0747078
-fixed_point_iteration:Iteration=72, var_wn=0.0745637
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-fixed_point_iteration:Iteration=74, var_wn=0.0742919
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-fixed_point_iteration:Iteration=76, var_wn=0.0740407
-fixed_point_iteration:Iteration=77, var_wn=0.0739223
-fixed_point_iteration:Iteration=78, var_wn=0.0738083
-fixed_point_iteration:Iteration=79, var_wn=0.0736987
-fixed_point_iteration:Iteration=80, var_wn=0.0735932
-fixed_point_iteration:Iteration=81, var_wn=0.0734916
-fixed_point_iteration:Iteration=82, var_wn=0.0733939
-fixed_point_iteration:Iteration=83, var_wn=0.0732998
-fixed_point_iteration:Iteration=84, var_wn=0.0732091
-fixed_point_iteration:Iteration=85, var_wn=0.0731219
-fixed_point_iteration:Iteration=86, var_wn=0.0730379
-fixed_point_iteration:Iteration=87, var_wn=0.0729569
-fixed_point_iteration:Iteration=88, var_wn=0.072879
-fixed_point_iteration:Iteration=89, var_wn=0.0728038
-fixed_point_iteration:Iteration=90, var_wn=0.0727315
-fixed_point_iteration:Iteration=91, var_wn=0.0726617
-fixed_point_iteration:Iteration=92, var_wn=0.0725945
-fixed_point_iteration:Iteration=93, var_wn=0.0725298
-fixed_point_iteration:Iteration=94, var_wn=0.0724673
-fixed_point_iteration:Iteration=95, var_wn=0.0724072
-fixed_point_iteration:Iteration=96, var_wn=0.0723491
-fixed_point_iteration:Iteration=97, var_wn=0.0722932
-fixed_point_iteration:Iteration=98, var_wn=0.0722393
-fixed_point_iteration:Iteration=99, var_wn=0.0721873
-fixed_point_iteration:Iteration=100, var_wn=0.0721372
-fixed_point_iteration:Iteration=101, var_wn=0.0720888
-fixed_point_iteration:Iteration=102, var_wn=0.0720422
-fixed_point_iteration:Iteration=103, var_wn=0.0719972
-fixed_point_iteration:Iteration=104, var_wn=0.0719538
-fixed_point_iteration:Iteration=105, var_wn=0.0719119
-fixed_point_iteration:Iteration=106, var_wn=0.0718716
-fixed_point_iteration:Iteration=107, var_wn=0.0718326
-fixed_point_iteration:Iteration=108, var_wn=0.0717951
-fixed_point_iteration:Iteration=109, var_wn=0.0717588
-fixed_point_iteration:Iteration=110, var_wn=0.0717238
-fixed_point_iteration:Iteration=111, var_wn=0.0716901
-fixed_point_iteration:Iteration=112, var_wn=0.0716575
-fixed_point_iteration:Iteration=113, var_wn=0.0716261
-fixed_point_iteration:Iteration=114, var_wn=0.0715957
-fixed_point_iteration:Iteration=115, var_wn=0.0715664
-fixed_point_iteration:Iteration=116, var_wn=0.0715382
-fixed_point_iteration:Iteration=117, var_wn=0.0715109
-fixed_point_iteration:Iteration=118, var_wn=0.0714846
-fixed_point_iteration:Iteration=119, var_wn=0.0714592
-fixed_point_iteration:Iteration=120, var_wn=0.0714347
-fixed_point_iteration:Iteration=121, var_wn=0.071411
-fixed_point_iteration:Iteration=122, var_wn=0.0713881
-fixed_point_iteration:Iteration=123, var_wn=0.0713661
-fixed_point_iteration:Iteration=124, var_wn=0.0713448
-fixed_point_iteration:Iteration=125, var_wn=0.0713242
-fixed_point_iteration:Iteration=126, var_wn=0.0713044
-fixed_point_iteration:Iteration=127, var_wn=0.0712852
-fixed_point_iteration:Iteration=128, var_wn=0.0712667
-fixed_point_iteration:Iteration=129, var_wn=0.0712488
-fixed_point_iteration:Iteration=130, var_wn=0.0712316
-fixed_point_iteration:Iteration=131, var_wn=0.0712149
-fixed_point_iteration:Iteration=132, var_wn=0.0711988
-fixed_point_iteration:Iteration=133, var_wn=0.0711833
-fixed_point_iteration:Iteration=134, var_wn=0.0711683
-fixed_point_iteration:Iteration=135, var_wn=0.0711538
-fixed_point_iteration:Iteration=136, var_wn=0.0711398
-fixed_point_iteration:Iteration=137, var_wn=0.0711263
-fixed_point_iteration:Iteration=138, var_wn=0.0711133
-fixed_point_iteration:Iteration=139, var_wn=0.0711007
-fixed_point_iteration:Iteration=140, var_wn=0.0710885
-fixed_point_iteration:Iteration=141, var_wn=0.0710768
-fixed_point_iteration:Iteration=142, var_wn=0.0710654
-fixed_point_iteration:Iteration=143, var_wn=0.0710545
-fixed_point_iteration:Iteration=144, var_wn=0.0710439
-fixed_point_iteration:Iteration=145, var_wn=0.0710337
-fixed_point_iteration:Iteration=146, var_wn=0.0710238
-WN variance = 0.0710238
-Partition size = (34,13,13)
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-'zeta.csv' -> 'zeta-none.csv'
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-gramcharlier
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = MA
-Verification scheme = manual
-MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = dist=gram_charlier,skewness=2.25,kurtosis=0.4,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
-err = 0.999006
-err = 0.171001
-err = 0.25565
-err = 0.275353
-err = 6.34477e+26
-err = 7.61373e+26
-err = 4.86898e+32
-err = 4.86898e+32
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03444e+34
-err = 7.03447e+34
-err = 7.03447e+34
-err = 7.03807e+34
-err = 7.03808e+34
-err = 7.26744e+34
-trim = 2
-ACF variance = 1
-fixed_point_iteration:Iteration=0, var_wn=0.541662
-fixed_point_iteration:Iteration=1, var_wn=0.387581
-fixed_point_iteration:Iteration=2, var_wn=0.309602
-fixed_point_iteration:Iteration=3, var_wn=0.262404
-fixed_point_iteration:Iteration=4, var_wn=0.230656
-fixed_point_iteration:Iteration=5, var_wn=0.207721
-fixed_point_iteration:Iteration=6, var_wn=0.190288
-fixed_point_iteration:Iteration=7, var_wn=0.176535
-fixed_point_iteration:Iteration=8, var_wn=0.165376
-fixed_point_iteration:Iteration=9, var_wn=0.156125
-fixed_point_iteration:Iteration=10, var_wn=0.148322
-fixed_point_iteration:Iteration=11, var_wn=0.141649
-fixed_point_iteration:Iteration=12, var_wn=0.135875
-fixed_point_iteration:Iteration=13, var_wn=0.130829
-fixed_point_iteration:Iteration=14, var_wn=0.126382
-fixed_point_iteration:Iteration=15, var_wn=0.122434
-fixed_point_iteration:Iteration=16, var_wn=0.118905
-fixed_point_iteration:Iteration=17, var_wn=0.115733
-fixed_point_iteration:Iteration=18, var_wn=0.112867
-fixed_point_iteration:Iteration=19, var_wn=0.110265
-fixed_point_iteration:Iteration=20, var_wn=0.107894
-fixed_point_iteration:Iteration=21, var_wn=0.105725
-fixed_point_iteration:Iteration=22, var_wn=0.103733
-fixed_point_iteration:Iteration=23, var_wn=0.101899
-fixed_point_iteration:Iteration=24, var_wn=0.100206
-fixed_point_iteration:Iteration=25, var_wn=0.0986382
-fixed_point_iteration:Iteration=26, var_wn=0.0971831
-fixed_point_iteration:Iteration=27, var_wn=0.0958297
-fixed_point_iteration:Iteration=28, var_wn=0.0945682
-fixed_point_iteration:Iteration=29, var_wn=0.0933903
-fixed_point_iteration:Iteration=30, var_wn=0.0922883
-fixed_point_iteration:Iteration=31, var_wn=0.0912558
-fixed_point_iteration:Iteration=32, var_wn=0.0902869
-fixed_point_iteration:Iteration=33, var_wn=0.0893763
-fixed_point_iteration:Iteration=34, var_wn=0.0885194
-fixed_point_iteration:Iteration=35, var_wn=0.087712
-fixed_point_iteration:Iteration=36, var_wn=0.0869503
-fixed_point_iteration:Iteration=37, var_wn=0.086231
-fixed_point_iteration:Iteration=38, var_wn=0.085551
-fixed_point_iteration:Iteration=39, var_wn=0.0849075
-fixed_point_iteration:Iteration=40, var_wn=0.0842979
-fixed_point_iteration:Iteration=41, var_wn=0.0837201
-fixed_point_iteration:Iteration=42, var_wn=0.0831718
-fixed_point_iteration:Iteration=43, var_wn=0.0826511
-fixed_point_iteration:Iteration=44, var_wn=0.0821564
-fixed_point_iteration:Iteration=45, var_wn=0.0816859
-fixed_point_iteration:Iteration=46, var_wn=0.0812382
-fixed_point_iteration:Iteration=47, var_wn=0.0808119
-fixed_point_iteration:Iteration=48, var_wn=0.0804057
-fixed_point_iteration:Iteration=49, var_wn=0.0800185
-fixed_point_iteration:Iteration=50, var_wn=0.0796491
-fixed_point_iteration:Iteration=51, var_wn=0.0792966
-fixed_point_iteration:Iteration=52, var_wn=0.07896
-fixed_point_iteration:Iteration=53, var_wn=0.0786385
-fixed_point_iteration:Iteration=54, var_wn=0.0783313
-fixed_point_iteration:Iteration=55, var_wn=0.0780375
-fixed_point_iteration:Iteration=56, var_wn=0.0777565
-fixed_point_iteration:Iteration=57, var_wn=0.0774875
-fixed_point_iteration:Iteration=58, var_wn=0.0772301
-fixed_point_iteration:Iteration=59, var_wn=0.0769836
-fixed_point_iteration:Iteration=60, var_wn=0.0767475
-fixed_point_iteration:Iteration=61, var_wn=0.0765213
-fixed_point_iteration:Iteration=62, var_wn=0.0763044
-fixed_point_iteration:Iteration=63, var_wn=0.0760964
-fixed_point_iteration:Iteration=64, var_wn=0.0758969
-fixed_point_iteration:Iteration=65, var_wn=0.0757056
-fixed_point_iteration:Iteration=66, var_wn=0.075522
-fixed_point_iteration:Iteration=67, var_wn=0.0753457
-fixed_point_iteration:Iteration=68, var_wn=0.0751764
-fixed_point_iteration:Iteration=69, var_wn=0.0750139
-fixed_point_iteration:Iteration=70, var_wn=0.0748578
-fixed_point_iteration:Iteration=71, var_wn=0.0747078
-fixed_point_iteration:Iteration=72, var_wn=0.0745637
-fixed_point_iteration:Iteration=73, var_wn=0.0744251
-fixed_point_iteration:Iteration=74, var_wn=0.0742919
-fixed_point_iteration:Iteration=75, var_wn=0.0741639
-fixed_point_iteration:Iteration=76, var_wn=0.0740407
-fixed_point_iteration:Iteration=77, var_wn=0.0739223
-fixed_point_iteration:Iteration=78, var_wn=0.0738083
-fixed_point_iteration:Iteration=79, var_wn=0.0736987
-fixed_point_iteration:Iteration=80, var_wn=0.0735932
-fixed_point_iteration:Iteration=81, var_wn=0.0734916
-fixed_point_iteration:Iteration=82, var_wn=0.0733939
-fixed_point_iteration:Iteration=83, var_wn=0.0732998
-fixed_point_iteration:Iteration=84, var_wn=0.0732091
-fixed_point_iteration:Iteration=85, var_wn=0.0731219
-fixed_point_iteration:Iteration=86, var_wn=0.0730379
-fixed_point_iteration:Iteration=87, var_wn=0.0729569
-fixed_point_iteration:Iteration=88, var_wn=0.072879
-fixed_point_iteration:Iteration=89, var_wn=0.0728038
-fixed_point_iteration:Iteration=90, var_wn=0.0727315
-fixed_point_iteration:Iteration=91, var_wn=0.0726617
-fixed_point_iteration:Iteration=92, var_wn=0.0725945
-fixed_point_iteration:Iteration=93, var_wn=0.0725298
-fixed_point_iteration:Iteration=94, var_wn=0.0724673
-fixed_point_iteration:Iteration=95, var_wn=0.0724072
-fixed_point_iteration:Iteration=96, var_wn=0.0723491
-fixed_point_iteration:Iteration=97, var_wn=0.0722932
-fixed_point_iteration:Iteration=98, var_wn=0.0722393
-fixed_point_iteration:Iteration=99, var_wn=0.0721873
-fixed_point_iteration:Iteration=100, var_wn=0.0721372
-fixed_point_iteration:Iteration=101, var_wn=0.0720888
-fixed_point_iteration:Iteration=102, var_wn=0.0720422
-fixed_point_iteration:Iteration=103, var_wn=0.0719972
-fixed_point_iteration:Iteration=104, var_wn=0.0719538
-fixed_point_iteration:Iteration=105, var_wn=0.0719119
-fixed_point_iteration:Iteration=106, var_wn=0.0718716
-fixed_point_iteration:Iteration=107, var_wn=0.0718326
-fixed_point_iteration:Iteration=108, var_wn=0.0717951
-fixed_point_iteration:Iteration=109, var_wn=0.0717588
-fixed_point_iteration:Iteration=110, var_wn=0.0717238
-fixed_point_iteration:Iteration=111, var_wn=0.0716901
-fixed_point_iteration:Iteration=112, var_wn=0.0716575
-fixed_point_iteration:Iteration=113, var_wn=0.0716261
-fixed_point_iteration:Iteration=114, var_wn=0.0715957
-fixed_point_iteration:Iteration=115, var_wn=0.0715664
-fixed_point_iteration:Iteration=116, var_wn=0.0715382
-fixed_point_iteration:Iteration=117, var_wn=0.0715109
-fixed_point_iteration:Iteration=118, var_wn=0.0714846
-fixed_point_iteration:Iteration=119, var_wn=0.0714592
-fixed_point_iteration:Iteration=120, var_wn=0.0714347
-fixed_point_iteration:Iteration=121, var_wn=0.071411
-fixed_point_iteration:Iteration=122, var_wn=0.0713881
-fixed_point_iteration:Iteration=123, var_wn=0.0713661
-fixed_point_iteration:Iteration=124, var_wn=0.0713448
-fixed_point_iteration:Iteration=125, var_wn=0.0713242
-fixed_point_iteration:Iteration=126, var_wn=0.0713044
-fixed_point_iteration:Iteration=127, var_wn=0.0712852
-fixed_point_iteration:Iteration=128, var_wn=0.0712667
-fixed_point_iteration:Iteration=129, var_wn=0.0712488
-fixed_point_iteration:Iteration=130, var_wn=0.0712316
-fixed_point_iteration:Iteration=131, var_wn=0.0712149
-fixed_point_iteration:Iteration=132, var_wn=0.0711988
-fixed_point_iteration:Iteration=133, var_wn=0.0711833
-fixed_point_iteration:Iteration=134, var_wn=0.0711683
-fixed_point_iteration:Iteration=135, var_wn=0.0711538
-fixed_point_iteration:Iteration=136, var_wn=0.0711398
-fixed_point_iteration:Iteration=137, var_wn=0.0711263
-fixed_point_iteration:Iteration=138, var_wn=0.0711133
-fixed_point_iteration:Iteration=139, var_wn=0.0711007
-fixed_point_iteration:Iteration=140, var_wn=0.0710885
-fixed_point_iteration:Iteration=141, var_wn=0.0710768
-fixed_point_iteration:Iteration=142, var_wn=0.0710654
-fixed_point_iteration:Iteration=143, var_wn=0.0710545
-fixed_point_iteration:Iteration=144, var_wn=0.0710439
-fixed_point_iteration:Iteration=145, var_wn=0.0710337
-fixed_point_iteration:Iteration=146, var_wn=0.0710238
-WN variance = 0.0710238
-Partition size = (34,13,13)
-
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-'zeta.csv' -> 'zeta-gramcharlier.csv'
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-skewnormal
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = MA
-Verification scheme = manual
-MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = dist=skew_normal,mean=0,stdev=1,alpha=1,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-err = inf
-trim = 0
-ACF variance = 1
-fixed_point_iteration:Iteration=0, var_wn=0.541662
-fixed_point_iteration:Iteration=1, var_wn=0.387581
-fixed_point_iteration:Iteration=2, var_wn=0.309602
-fixed_point_iteration:Iteration=3, var_wn=0.262404
-fixed_point_iteration:Iteration=4, var_wn=0.230656
-fixed_point_iteration:Iteration=5, var_wn=0.207721
-fixed_point_iteration:Iteration=6, var_wn=0.190288
-fixed_point_iteration:Iteration=7, var_wn=0.176535
-fixed_point_iteration:Iteration=8, var_wn=0.165376
-fixed_point_iteration:Iteration=9, var_wn=0.156125
-fixed_point_iteration:Iteration=10, var_wn=0.148322
-fixed_point_iteration:Iteration=11, var_wn=0.141649
-fixed_point_iteration:Iteration=12, var_wn=0.135875
-fixed_point_iteration:Iteration=13, var_wn=0.130829
-fixed_point_iteration:Iteration=14, var_wn=0.126382
-fixed_point_iteration:Iteration=15, var_wn=0.122434
-fixed_point_iteration:Iteration=16, var_wn=0.118905
-fixed_point_iteration:Iteration=17, var_wn=0.115733
-fixed_point_iteration:Iteration=18, var_wn=0.112867
-fixed_point_iteration:Iteration=19, var_wn=0.110265
-fixed_point_iteration:Iteration=20, var_wn=0.107894
-fixed_point_iteration:Iteration=21, var_wn=0.105725
-fixed_point_iteration:Iteration=22, var_wn=0.103733
-fixed_point_iteration:Iteration=23, var_wn=0.101899
-fixed_point_iteration:Iteration=24, var_wn=0.100206
-fixed_point_iteration:Iteration=25, var_wn=0.0986382
-fixed_point_iteration:Iteration=26, var_wn=0.0971831
-fixed_point_iteration:Iteration=27, var_wn=0.0958297
-fixed_point_iteration:Iteration=28, var_wn=0.0945682
-fixed_point_iteration:Iteration=29, var_wn=0.0933903
-fixed_point_iteration:Iteration=30, var_wn=0.0922883
-fixed_point_iteration:Iteration=31, var_wn=0.0912558
-fixed_point_iteration:Iteration=32, var_wn=0.0902869
-fixed_point_iteration:Iteration=33, var_wn=0.0893763
-fixed_point_iteration:Iteration=34, var_wn=0.0885194
-fixed_point_iteration:Iteration=35, var_wn=0.087712
-fixed_point_iteration:Iteration=36, var_wn=0.0869503
-fixed_point_iteration:Iteration=37, var_wn=0.086231
-fixed_point_iteration:Iteration=38, var_wn=0.085551
-fixed_point_iteration:Iteration=39, var_wn=0.0849075
-fixed_point_iteration:Iteration=40, var_wn=0.0842979
-fixed_point_iteration:Iteration=41, var_wn=0.0837201
-fixed_point_iteration:Iteration=42, var_wn=0.0831718
-fixed_point_iteration:Iteration=43, var_wn=0.0826511
-fixed_point_iteration:Iteration=44, var_wn=0.0821564
-fixed_point_iteration:Iteration=45, var_wn=0.0816859
-fixed_point_iteration:Iteration=46, var_wn=0.0812382
-fixed_point_iteration:Iteration=47, var_wn=0.0808119
-fixed_point_iteration:Iteration=48, var_wn=0.0804057
-fixed_point_iteration:Iteration=49, var_wn=0.0800185
-fixed_point_iteration:Iteration=50, var_wn=0.0796491
-fixed_point_iteration:Iteration=51, var_wn=0.0792966
-fixed_point_iteration:Iteration=52, var_wn=0.07896
-fixed_point_iteration:Iteration=53, var_wn=0.0786385
-fixed_point_iteration:Iteration=54, var_wn=0.0783313
-fixed_point_iteration:Iteration=55, var_wn=0.0780375
-fixed_point_iteration:Iteration=56, var_wn=0.0777565
-fixed_point_iteration:Iteration=57, var_wn=0.0774875
-fixed_point_iteration:Iteration=58, var_wn=0.0772301
-fixed_point_iteration:Iteration=59, var_wn=0.0769836
-fixed_point_iteration:Iteration=60, var_wn=0.0767475
-fixed_point_iteration:Iteration=61, var_wn=0.0765213
-fixed_point_iteration:Iteration=62, var_wn=0.0763044
-fixed_point_iteration:Iteration=63, var_wn=0.0760964
-fixed_point_iteration:Iteration=64, var_wn=0.0758969
-fixed_point_iteration:Iteration=65, var_wn=0.0757056
-fixed_point_iteration:Iteration=66, var_wn=0.075522
-fixed_point_iteration:Iteration=67, var_wn=0.0753457
-fixed_point_iteration:Iteration=68, var_wn=0.0751764
-fixed_point_iteration:Iteration=69, var_wn=0.0750139
-fixed_point_iteration:Iteration=70, var_wn=0.0748578
-fixed_point_iteration:Iteration=71, var_wn=0.0747078
-fixed_point_iteration:Iteration=72, var_wn=0.0745637
-fixed_point_iteration:Iteration=73, var_wn=0.0744251
-fixed_point_iteration:Iteration=74, var_wn=0.0742919
-fixed_point_iteration:Iteration=75, var_wn=0.0741639
-fixed_point_iteration:Iteration=76, var_wn=0.0740407
-fixed_point_iteration:Iteration=77, var_wn=0.0739223
-fixed_point_iteration:Iteration=78, var_wn=0.0738083
-fixed_point_iteration:Iteration=79, var_wn=0.0736987
-fixed_point_iteration:Iteration=80, var_wn=0.0735932
-fixed_point_iteration:Iteration=81, var_wn=0.0734916
-fixed_point_iteration:Iteration=82, var_wn=0.0733939
-fixed_point_iteration:Iteration=83, var_wn=0.0732998
-fixed_point_iteration:Iteration=84, var_wn=0.0732091
-fixed_point_iteration:Iteration=85, var_wn=0.0731219
-fixed_point_iteration:Iteration=86, var_wn=0.0730379
-fixed_point_iteration:Iteration=87, var_wn=0.0729569
-fixed_point_iteration:Iteration=88, var_wn=0.072879
-fixed_point_iteration:Iteration=89, var_wn=0.0728038
-fixed_point_iteration:Iteration=90, var_wn=0.0727315
-fixed_point_iteration:Iteration=91, var_wn=0.0726617
-fixed_point_iteration:Iteration=92, var_wn=0.0725945
-fixed_point_iteration:Iteration=93, var_wn=0.0725298
-fixed_point_iteration:Iteration=94, var_wn=0.0724673
-fixed_point_iteration:Iteration=95, var_wn=0.0724072
-fixed_point_iteration:Iteration=96, var_wn=0.0723491
-fixed_point_iteration:Iteration=97, var_wn=0.0722932
-fixed_point_iteration:Iteration=98, var_wn=0.0722393
-fixed_point_iteration:Iteration=99, var_wn=0.0721873
-fixed_point_iteration:Iteration=100, var_wn=0.0721372
-fixed_point_iteration:Iteration=101, var_wn=0.0720888
-fixed_point_iteration:Iteration=102, var_wn=0.0720422
-fixed_point_iteration:Iteration=103, var_wn=0.0719972
-fixed_point_iteration:Iteration=104, var_wn=0.0719538
-fixed_point_iteration:Iteration=105, var_wn=0.0719119
-fixed_point_iteration:Iteration=106, var_wn=0.0718716
-fixed_point_iteration:Iteration=107, var_wn=0.0718326
-fixed_point_iteration:Iteration=108, var_wn=0.0717951
-fixed_point_iteration:Iteration=109, var_wn=0.0717588
-fixed_point_iteration:Iteration=110, var_wn=0.0717238
-fixed_point_iteration:Iteration=111, var_wn=0.0716901
-fixed_point_iteration:Iteration=112, var_wn=0.0716575
-fixed_point_iteration:Iteration=113, var_wn=0.0716261
-fixed_point_iteration:Iteration=114, var_wn=0.0715957
-fixed_point_iteration:Iteration=115, var_wn=0.0715664
-fixed_point_iteration:Iteration=116, var_wn=0.0715382
-fixed_point_iteration:Iteration=117, var_wn=0.0715109
-fixed_point_iteration:Iteration=118, var_wn=0.0714846
-fixed_point_iteration:Iteration=119, var_wn=0.0714592
-fixed_point_iteration:Iteration=120, var_wn=0.0714347
-fixed_point_iteration:Iteration=121, var_wn=0.071411
-fixed_point_iteration:Iteration=122, var_wn=0.0713881
-fixed_point_iteration:Iteration=123, var_wn=0.0713661
-fixed_point_iteration:Iteration=124, var_wn=0.0713448
-fixed_point_iteration:Iteration=125, var_wn=0.0713242
-fixed_point_iteration:Iteration=126, var_wn=0.0713044
-fixed_point_iteration:Iteration=127, var_wn=0.0712852
-fixed_point_iteration:Iteration=128, var_wn=0.0712667
-fixed_point_iteration:Iteration=129, var_wn=0.0712488
-fixed_point_iteration:Iteration=130, var_wn=0.0712316
-fixed_point_iteration:Iteration=131, var_wn=0.0712149
-fixed_point_iteration:Iteration=132, var_wn=0.0711988
-fixed_point_iteration:Iteration=133, var_wn=0.0711833
-fixed_point_iteration:Iteration=134, var_wn=0.0711683
-fixed_point_iteration:Iteration=135, var_wn=0.0711538
-fixed_point_iteration:Iteration=136, var_wn=0.0711398
-fixed_point_iteration:Iteration=137, var_wn=0.0711263
-fixed_point_iteration:Iteration=138, var_wn=0.0711133
-fixed_point_iteration:Iteration=139, var_wn=0.0711007
-fixed_point_iteration:Iteration=140, var_wn=0.0710885
-fixed_point_iteration:Iteration=141, var_wn=0.0710768
-fixed_point_iteration:Iteration=142, var_wn=0.0710654
-fixed_point_iteration:Iteration=143, var_wn=0.0710545
-fixed_point_iteration:Iteration=144, var_wn=0.0710439
-fixed_point_iteration:Iteration=145, var_wn=0.0710337
-fixed_point_iteration:Iteration=146, var_wn=0.0710238
-WN variance = 0.0710238
-Partition size = (34,13,13)
-
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-'zeta.csv' -> 'zeta-skewnormal.csv'
-NIT for standing waves
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-none
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = AR
-Verification scheme = manual
-AR model = order=(7,7,7),acf.shape=(10,10,10)
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = none
-ACF variance = 1
-WN variance = 0.000519022
-Partition size = (21,10,10)
-
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-Zeta size = (192,32,32)
-'zeta.csv' -> 'zeta-none.csv'
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-gramcharlier
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = AR
-Verification scheme = manual
-AR model = order=(7,7,7),acf.shape=(10,10,10)
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = dist=gram_charlier,skewness=3.25,kurtosis=2.4,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
-err = 0.995366
-err = 0.472576
-err = 0.608796
-err = 0.61584
-err = 0.639818
-err = 12.4501
-err = 9.45159e+10
-err = 1.08018e+11
-err = 3.05905e+13
-err = 3.39774e+13
-err = 1.70414e+14
-err = 1.82818e+14
-err = 1.83166e+14
-err = 2.11267e+25
-err = 9.15985e+25
-err = 2.75794e+29
-err = 2.79745e+29
-err = 3.63216e+31
-err = 3.64474e+31
-err = 2.32998e+33
-trim = 2
-ACF variance = 1
-WN variance = 0.000519022
-Partition size = (21,10,10)
-
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-Zeta size = (192,32,32)
-'zeta.csv' -> 'zeta-gramcharlier.csv'
-Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-skewnormal
-Output grid size = (200,40,40)
-Output grid patch size = (1,1,1)
-Model = AR
-Verification scheme = manual
-AR model = order=(7,7,7),acf.shape=(10,10,10)
-Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
-Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
-NIT transform = dist=skew_normal,mean=0,stdev=1,alpha=1,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
-err = 0.893011
-err = 0.269503
-err = 0.173329
-err = 0.0040605
-err = 2.82799e+09
-err = 4.3525e+25
-err = 4.3525e+25
-err = 7.2978e+33
-err = 2.7618e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-err = 3.06867e+44
-trim = 4
-ACF variance = 1
-WN variance = 0.000519022
-Partition size = (21,10,10)
-
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-Zeta size = (192,32,32)
-'zeta.csv' -> 'zeta-skewnormal.csv'
-#+end_example
-** Download arma-benchmarks data from repository
-#+begin_src sh :exports none :results verbatim
-set -e
-dir=build/arma-benchmarks
-mkdir -p $dir
-if ! test -d "$dir/.git"
-then
- git clone https://github.com/igankevich/arma-benchmarks $dir
-fi
-cd $dir
-git checkout master
-git pull
-git checkout 1ed6679387f0b79d8495c8bf55a6b0b304347e48
-#+end_src
-
-#+RESULTS:
-: Ваша ветка обновлена в соответствии с «origin/master».
-: Already up-to-date.
* Introduction
**** Topic relevance.
diff --git a/setup.org b/setup.org
@@ -0,0 +1,1247 @@
+#+LATEX_CLASS: gost
+#+LATEX_CLASS_OPTIONS: [hidelinks,fontsize=14pt,paper=a4,pagesize,DIV=calc,noenddot]
+#+LATEX_HEADER_EXTRA: \input{preamble}
+#+OPTIONS: todo:nil title:nil ':t H:5
+#+STARTUP: indent
+#+PROPERTY: header-args:R :results graphics :exports results
+
+* Config :noexport:
+** Emacs
+#+begin_src elisp :exports none :results none
+;; GOST class
+(add-to-list 'org-latex-classes
+ '("gost"
+ "\\documentclass{gost}
+% default packages {{{
+[DEFAULT-PACKAGES]% }}}
+% more packages {{{
+[PACKAGES]% }}}
+% extra commands {{{
+[EXTRA]% }}}"
+ ("\\section{%s}" . "\\section*{%s}")
+ ("\\subsection{%s}" . "\\subsection*{%s}")
+ ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
+ ("\\paragraph{%s}" . "\\paragraph*{%s}")
+ ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
+;; do not include obsolete packages
+(setq org-latex-default-packages-alist
+ '(("" "graphicx")
+ ("" "booktabs")
+ ("" "amsmath")
+ ("" "amssymb")
+ ("" "hyperref")
+ ("" "tikz")
+ ("" "cite")
+ ("" "url")
+ ("" "polyglossia")
+ ))
+;; auto-detect document language
+(setq org-latex-hyperref-template
+"%% meta data {{{
+\\hypersetup{
+ pdfauthor={%a},
+ pdftitle={%t},
+ pdfkeywords={%k},
+ pdfsubject={%d},
+ pdfcreator={%c},
+ pdflang={%L},
+ unicode={true}
+}
+\\setdefaultlanguage{%l}
+%% }}}
+")
+;; move table/figure captions to the bottom
+(setq org-latex-caption-above nil)
+;; preserve original image width
+(setq org-latex-image-default-width nil)
+;; booktabs tables
+(setq org-export-latex-tables-hline "\\midrule")
+(setq org-export-latex-tables-tstart "\\toprule")
+(setq org-export-latex-tables-tend "\\bottomrule")
+#+end_src
+
+** Produce data for Q-Q, ACF and velocity potential plots
+#+begin_src sh :exports none :results verbatim
+root=$(pwd)
+for testname in \
+ propagating_wave \
+ standing_wave \
+ plain_wave_linear_solver \
+ plain_wave_high_amplitude_solver
+do
+ wd=$root/build/$testname
+ rm -rf $wd
+ mkdir -p $wd
+ cd $wd
+ cp $root/config/mt.dat .
+ arma -c $root/config/$testname.arma 2>&1
+done
+#+end_src
+
+#+RESULTS:
+#+begin_example
+Input file = /home/igankevich/workspace/arma-thesis/config/propagating_wave.arma
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = MA
+Verification scheme = manual
+MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
+ACF variance = 5
+fixed_point_iteration:Iteration=0, var_wn=2.70831
+fixed_point_iteration:Iteration=1, var_wn=1.93791
+fixed_point_iteration:Iteration=2, var_wn=1.54801
+fixed_point_iteration:Iteration=3, var_wn=1.31202
+fixed_point_iteration:Iteration=4, var_wn=1.15328
+fixed_point_iteration:Iteration=5, var_wn=1.0386
+fixed_point_iteration:Iteration=6, var_wn=0.951442
+fixed_point_iteration:Iteration=7, var_wn=0.882674
+fixed_point_iteration:Iteration=8, var_wn=0.82688
+fixed_point_iteration:Iteration=9, var_wn=0.780623
+fixed_point_iteration:Iteration=10, var_wn=0.74161
+fixed_point_iteration:Iteration=11, var_wn=0.708244
+fixed_point_iteration:Iteration=12, var_wn=0.679374
+fixed_point_iteration:Iteration=13, var_wn=0.654145
+fixed_point_iteration:Iteration=14, var_wn=0.63191
+fixed_point_iteration:Iteration=15, var_wn=0.612168
+fixed_point_iteration:Iteration=16, var_wn=0.594523
+fixed_point_iteration:Iteration=17, var_wn=0.578663
+fixed_point_iteration:Iteration=18, var_wn=0.564333
+fixed_point_iteration:Iteration=19, var_wn=0.551325
+fixed_point_iteration:Iteration=20, var_wn=0.539469
+fixed_point_iteration:Iteration=21, var_wn=0.528623
+fixed_point_iteration:Iteration=22, var_wn=0.518666
+fixed_point_iteration:Iteration=23, var_wn=0.509497
+fixed_point_iteration:Iteration=24, var_wn=0.50103
+fixed_point_iteration:Iteration=25, var_wn=0.493191
+fixed_point_iteration:Iteration=26, var_wn=0.485915
+fixed_point_iteration:Iteration=27, var_wn=0.479148
+fixed_point_iteration:Iteration=28, var_wn=0.472841
+fixed_point_iteration:Iteration=29, var_wn=0.466951
+fixed_point_iteration:Iteration=30, var_wn=0.461442
+fixed_point_iteration:Iteration=31, var_wn=0.456279
+fixed_point_iteration:Iteration=32, var_wn=0.451435
+fixed_point_iteration:Iteration=33, var_wn=0.446882
+fixed_point_iteration:Iteration=34, var_wn=0.442597
+fixed_point_iteration:Iteration=35, var_wn=0.43856
+fixed_point_iteration:Iteration=36, var_wn=0.434752
+fixed_point_iteration:Iteration=37, var_wn=0.431155
+fixed_point_iteration:Iteration=38, var_wn=0.427755
+fixed_point_iteration:Iteration=39, var_wn=0.424537
+fixed_point_iteration:Iteration=40, var_wn=0.42149
+fixed_point_iteration:Iteration=41, var_wn=0.4186
+fixed_point_iteration:Iteration=42, var_wn=0.415859
+fixed_point_iteration:Iteration=43, var_wn=0.413256
+fixed_point_iteration:Iteration=44, var_wn=0.410782
+fixed_point_iteration:Iteration=45, var_wn=0.408429
+fixed_point_iteration:Iteration=46, var_wn=0.406191
+fixed_point_iteration:Iteration=47, var_wn=0.404059
+fixed_point_iteration:Iteration=48, var_wn=0.402028
+fixed_point_iteration:Iteration=49, var_wn=0.400092
+fixed_point_iteration:Iteration=50, var_wn=0.398246
+fixed_point_iteration:Iteration=51, var_wn=0.396483
+fixed_point_iteration:Iteration=52, var_wn=0.3948
+fixed_point_iteration:Iteration=53, var_wn=0.393193
+fixed_point_iteration:Iteration=54, var_wn=0.391656
+fixed_point_iteration:Iteration=55, var_wn=0.390187
+fixed_point_iteration:Iteration=56, var_wn=0.388782
+fixed_point_iteration:Iteration=57, var_wn=0.387438
+fixed_point_iteration:Iteration=58, var_wn=0.386151
+fixed_point_iteration:Iteration=59, var_wn=0.384918
+fixed_point_iteration:Iteration=60, var_wn=0.383738
+fixed_point_iteration:Iteration=61, var_wn=0.382606
+fixed_point_iteration:Iteration=62, var_wn=0.381522
+fixed_point_iteration:Iteration=63, var_wn=0.380482
+fixed_point_iteration:Iteration=64, var_wn=0.379485
+fixed_point_iteration:Iteration=65, var_wn=0.378528
+fixed_point_iteration:Iteration=66, var_wn=0.37761
+fixed_point_iteration:Iteration=67, var_wn=0.376728
+fixed_point_iteration:Iteration=68, var_wn=0.375882
+fixed_point_iteration:Iteration=69, var_wn=0.37507
+fixed_point_iteration:Iteration=70, var_wn=0.374289
+fixed_point_iteration:Iteration=71, var_wn=0.373539
+fixed_point_iteration:Iteration=72, var_wn=0.372818
+fixed_point_iteration:Iteration=73, var_wn=0.372126
+fixed_point_iteration:Iteration=74, var_wn=0.37146
+fixed_point_iteration:Iteration=75, var_wn=0.370819
+fixed_point_iteration:Iteration=76, var_wn=0.370204
+fixed_point_iteration:Iteration=77, var_wn=0.369611
+fixed_point_iteration:Iteration=78, var_wn=0.369042
+fixed_point_iteration:Iteration=79, var_wn=0.368493
+fixed_point_iteration:Iteration=80, var_wn=0.367966
+fixed_point_iteration:Iteration=81, var_wn=0.367458
+fixed_point_iteration:Iteration=82, var_wn=0.366969
+fixed_point_iteration:Iteration=83, var_wn=0.366499
+fixed_point_iteration:Iteration=84, var_wn=0.366046
+fixed_point_iteration:Iteration=85, var_wn=0.365609
+fixed_point_iteration:Iteration=86, var_wn=0.365189
+fixed_point_iteration:Iteration=87, var_wn=0.364785
+fixed_point_iteration:Iteration=88, var_wn=0.364395
+fixed_point_iteration:Iteration=89, var_wn=0.364019
+fixed_point_iteration:Iteration=90, var_wn=0.363657
+fixed_point_iteration:Iteration=91, var_wn=0.363309
+fixed_point_iteration:Iteration=92, var_wn=0.362973
+fixed_point_iteration:Iteration=93, var_wn=0.362649
+fixed_point_iteration:Iteration=94, var_wn=0.362337
+fixed_point_iteration:Iteration=95, var_wn=0.362036
+fixed_point_iteration:Iteration=96, var_wn=0.361746
+fixed_point_iteration:Iteration=97, var_wn=0.361466
+fixed_point_iteration:Iteration=98, var_wn=0.361196
+fixed_point_iteration:Iteration=99, var_wn=0.360936
+fixed_point_iteration:Iteration=100, var_wn=0.360686
+fixed_point_iteration:Iteration=101, var_wn=0.360444
+fixed_point_iteration:Iteration=102, var_wn=0.360211
+fixed_point_iteration:Iteration=103, var_wn=0.359986
+fixed_point_iteration:Iteration=104, var_wn=0.359769
+fixed_point_iteration:Iteration=105, var_wn=0.35956
+fixed_point_iteration:Iteration=106, var_wn=0.359358
+fixed_point_iteration:Iteration=107, var_wn=0.359163
+fixed_point_iteration:Iteration=108, var_wn=0.358975
+fixed_point_iteration:Iteration=109, var_wn=0.358794
+fixed_point_iteration:Iteration=110, var_wn=0.358619
+fixed_point_iteration:Iteration=111, var_wn=0.35845
+fixed_point_iteration:Iteration=112, var_wn=0.358287
+fixed_point_iteration:Iteration=113, var_wn=0.35813
+fixed_point_iteration:Iteration=114, var_wn=0.357979
+fixed_point_iteration:Iteration=115, var_wn=0.357832
+fixed_point_iteration:Iteration=116, var_wn=0.357691
+fixed_point_iteration:Iteration=117, var_wn=0.357555
+fixed_point_iteration:Iteration=118, var_wn=0.357423
+fixed_point_iteration:Iteration=119, var_wn=0.357296
+fixed_point_iteration:Iteration=120, var_wn=0.357173
+fixed_point_iteration:Iteration=121, var_wn=0.357055
+fixed_point_iteration:Iteration=122, var_wn=0.356941
+fixed_point_iteration:Iteration=123, var_wn=0.35683
+fixed_point_iteration:Iteration=124, var_wn=0.356724
+fixed_point_iteration:Iteration=125, var_wn=0.356621
+fixed_point_iteration:Iteration=126, var_wn=0.356522
+fixed_point_iteration:Iteration=127, var_wn=0.356426
+fixed_point_iteration:Iteration=128, var_wn=0.356334
+fixed_point_iteration:Iteration=129, var_wn=0.356244
+fixed_point_iteration:Iteration=130, var_wn=0.356158
+fixed_point_iteration:Iteration=131, var_wn=0.356075
+fixed_point_iteration:Iteration=132, var_wn=0.355994
+fixed_point_iteration:Iteration=133, var_wn=0.355917
+fixed_point_iteration:Iteration=134, var_wn=0.355842
+fixed_point_iteration:Iteration=135, var_wn=0.355769
+fixed_point_iteration:Iteration=136, var_wn=0.355699
+fixed_point_iteration:Iteration=137, var_wn=0.355632
+fixed_point_iteration:Iteration=138, var_wn=0.355566
+fixed_point_iteration:Iteration=139, var_wn=0.355504
+fixed_point_iteration:Iteration=140, var_wn=0.355443
+fixed_point_iteration:Iteration=141, var_wn=0.355384
+fixed_point_iteration:Iteration=142, var_wn=0.355327
+fixed_point_iteration:Iteration=143, var_wn=0.355272
+fixed_point_iteration:Iteration=144, var_wn=0.35522
+fixed_point_iteration:Iteration=145, var_wn=0.355168
+fixed_point_iteration:Iteration=146, var_wn=0.355119
+fixed_point_iteration:Iteration=147, var_wn=0.355071
+fixed_point_iteration:Iteration=148, var_wn=0.355025
+fixed_point_iteration:Iteration=149, var_wn=0.354981
+fixed_point_iteration:Iteration=150, var_wn=0.354938
+fixed_point_iteration:Iteration=151, var_wn=0.354896
+fixed_point_iteration:Iteration=152, var_wn=0.354856
+fixed_point_iteration:Iteration=153, var_wn=0.354818
+fixed_point_iteration:Iteration=154, var_wn=0.35478
+fixed_point_iteration:Iteration=155, var_wn=0.354744
+fixed_point_iteration:Iteration=156, var_wn=0.354709
+fixed_point_iteration:Iteration=157, var_wn=0.354676
+fixed_point_iteration:Iteration=158, var_wn=0.354643
+fixed_point_iteration:Iteration=159, var_wn=0.354612
+fixed_point_iteration:Iteration=160, var_wn=0.354581
+fixed_point_iteration:Iteration=161, var_wn=0.354552
+fixed_point_iteration:Iteration=162, var_wn=0.354523
+fixed_point_iteration:Iteration=163, var_wn=0.354496
+fixed_point_iteration:Iteration=164, var_wn=0.35447
+fixed_point_iteration:Iteration=165, var_wn=0.354444
+fixed_point_iteration:Iteration=166, var_wn=0.354419
+fixed_point_iteration:Iteration=167, var_wn=0.354396
+fixed_point_iteration:Iteration=168, var_wn=0.354373
+fixed_point_iteration:Iteration=169, var_wn=0.35435
+fixed_point_iteration:Iteration=170, var_wn=0.354329
+fixed_point_iteration:Iteration=171, var_wn=0.354308
+fixed_point_iteration:Iteration=172, var_wn=0.354288
+fixed_point_iteration:Iteration=173, var_wn=0.354269
+fixed_point_iteration:Iteration=174, var_wn=0.35425
+fixed_point_iteration:Iteration=175, var_wn=0.354232
+fixed_point_iteration:Iteration=176, var_wn=0.354214
+fixed_point_iteration:Iteration=177, var_wn=0.354197
+fixed_point_iteration:Iteration=178, var_wn=0.354181
+fixed_point_iteration:Iteration=179, var_wn=0.354165
+fixed_point_iteration:Iteration=180, var_wn=0.35415
+fixed_point_iteration:Iteration=181, var_wn=0.354135
+fixed_point_iteration:Iteration=182, var_wn=0.354121
+fixed_point_iteration:Iteration=183, var_wn=0.354107
+fixed_point_iteration:Iteration=184, var_wn=0.354094
+fixed_point_iteration:Iteration=185, var_wn=0.354081
+fixed_point_iteration:Iteration=186, var_wn=0.354069
+fixed_point_iteration:Iteration=187, var_wn=0.354057
+fixed_point_iteration:Iteration=188, var_wn=0.354046
+fixed_point_iteration:Iteration=189, var_wn=0.354034
+fixed_point_iteration:Iteration=190, var_wn=0.354024
+fixed_point_iteration:Iteration=191, var_wn=0.354013
+fixed_point_iteration:Iteration=192, var_wn=0.354003
+fixed_point_iteration:Iteration=193, var_wn=0.353993
+WN variance = 0.353993
+Partition size = (34,13,13)
+Finished part [1/96]
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+Input file = /home/igankevich/workspace/arma-thesis/config/standing_wave.arma
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = AR
+Verification scheme = manual
+AR model = order=(7,7,7),acf.shape=(10,10,10)
+ACF variance = 5
+WN variance = 0.00259511
+Partition size = (21,10,10)
+Finished part [1/160]
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+Zeta size = (192,32,32)
+Input file = /home/igankevich/workspace/arma-thesis/config/plain_wave_linear_solver.arma
+Output grid size = (200,128,40)
+Output grid patch size = (1,0.0629921,0.205128)
+Model = plain_wave
+Verification scheme = manual
+Plain wave model = func=cos,amplitudes=[4],wavenumbers=[0.125],phases=[0],velocities=[0.5]
+Velocity potential solver name = N4arma8velocity13Linear_solverIdEE
+Velocity potential solver = wnmax=(0,0.25),depth=12,domain=from (10,-12) to (10,4) npoints (1,128)
+Input file = /home/igankevich/workspace/arma-thesis/config/plain_wave_high_amplitude_solver.arma
+Output grid size = (200,128,40)
+Output grid patch size = (1,0.0629921,0.205128)
+Model = plain_wave
+Verification scheme = manual
+Plain wave model = func=cos,amplitudes=[4],wavenumbers=[0.125],phases=[0],velocities=[0.5]
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=(0,0.25),depth=12,domain=from (10,-12) to (10,4) npoints (1,128)
+#+end_example
+** Produce NIT plots
+#+begin_src sh :exports none :results verbatim
+root=$(pwd)
+
+function generate_surface() {
+ none=$1
+ gcs=$2
+ sn=$3
+ testcase=$4
+
+ wd=$root/build/$testcase
+ rm -rf $wd
+ mkdir -p $wd
+ cd $wd
+ cp $root/config/mt.dat .
+
+ # run linear case
+ arma -c $root/config/$none 2>&1
+ cp -v zeta.csv zeta-none.csv
+
+ # run Gram---Charlier case
+ arma -c $root/config/$gcs 2>&1
+ cp -v zeta.csv zeta-gramcharlier.csv
+
+ # run skew normal case
+ arma -c $root/config/$sn 2>&1
+ cp -v zeta.csv zeta-skewnormal.csv
+}
+
+echo "NIT for propagating waves"
+generate_surface \
+ nit-propagating-none \
+ nit-propagating-gramcharlier \
+ nit-propagating-skewnormal \
+ nit-propagating
+
+echo "NIT for standing waves"
+generate_surface \
+ nit-standing-none \
+ nit-standing-gramcharlier \
+ nit-standing-skewnormal \
+ nit-standing
+#+end_src
+
+#+RESULTS:
+#+begin_example
+NIT for propagating waves
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-none
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = MA
+Verification scheme = manual
+MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = none
+ACF variance = 1
+fixed_point_iteration:Iteration=0, var_wn=0.541662
+fixed_point_iteration:Iteration=1, var_wn=0.387581
+fixed_point_iteration:Iteration=2, var_wn=0.309602
+fixed_point_iteration:Iteration=3, var_wn=0.262404
+fixed_point_iteration:Iteration=4, var_wn=0.230656
+fixed_point_iteration:Iteration=5, var_wn=0.207721
+fixed_point_iteration:Iteration=6, var_wn=0.190288
+fixed_point_iteration:Iteration=7, var_wn=0.176535
+fixed_point_iteration:Iteration=8, var_wn=0.165376
+fixed_point_iteration:Iteration=9, var_wn=0.156125
+fixed_point_iteration:Iteration=10, var_wn=0.148322
+fixed_point_iteration:Iteration=11, var_wn=0.141649
+fixed_point_iteration:Iteration=12, var_wn=0.135875
+fixed_point_iteration:Iteration=13, var_wn=0.130829
+fixed_point_iteration:Iteration=14, var_wn=0.126382
+fixed_point_iteration:Iteration=15, var_wn=0.122434
+fixed_point_iteration:Iteration=16, var_wn=0.118905
+fixed_point_iteration:Iteration=17, var_wn=0.115733
+fixed_point_iteration:Iteration=18, var_wn=0.112867
+fixed_point_iteration:Iteration=19, var_wn=0.110265
+fixed_point_iteration:Iteration=20, var_wn=0.107894
+fixed_point_iteration:Iteration=21, var_wn=0.105725
+fixed_point_iteration:Iteration=22, var_wn=0.103733
+fixed_point_iteration:Iteration=23, var_wn=0.101899
+fixed_point_iteration:Iteration=24, var_wn=0.100206
+fixed_point_iteration:Iteration=25, var_wn=0.0986382
+fixed_point_iteration:Iteration=26, var_wn=0.0971831
+fixed_point_iteration:Iteration=27, var_wn=0.0958297
+fixed_point_iteration:Iteration=28, var_wn=0.0945682
+fixed_point_iteration:Iteration=29, var_wn=0.0933903
+fixed_point_iteration:Iteration=30, var_wn=0.0922883
+fixed_point_iteration:Iteration=31, var_wn=0.0912558
+fixed_point_iteration:Iteration=32, var_wn=0.0902869
+fixed_point_iteration:Iteration=33, var_wn=0.0893763
+fixed_point_iteration:Iteration=34, var_wn=0.0885194
+fixed_point_iteration:Iteration=35, var_wn=0.087712
+fixed_point_iteration:Iteration=36, var_wn=0.0869503
+fixed_point_iteration:Iteration=37, var_wn=0.086231
+fixed_point_iteration:Iteration=38, var_wn=0.085551
+fixed_point_iteration:Iteration=39, var_wn=0.0849075
+fixed_point_iteration:Iteration=40, var_wn=0.0842979
+fixed_point_iteration:Iteration=41, var_wn=0.0837201
+fixed_point_iteration:Iteration=42, var_wn=0.0831718
+fixed_point_iteration:Iteration=43, var_wn=0.0826511
+fixed_point_iteration:Iteration=44, var_wn=0.0821564
+fixed_point_iteration:Iteration=45, var_wn=0.0816859
+fixed_point_iteration:Iteration=46, var_wn=0.0812382
+fixed_point_iteration:Iteration=47, var_wn=0.0808119
+fixed_point_iteration:Iteration=48, var_wn=0.0804057
+fixed_point_iteration:Iteration=49, var_wn=0.0800185
+fixed_point_iteration:Iteration=50, var_wn=0.0796491
+fixed_point_iteration:Iteration=51, var_wn=0.0792966
+fixed_point_iteration:Iteration=52, var_wn=0.07896
+fixed_point_iteration:Iteration=53, var_wn=0.0786385
+fixed_point_iteration:Iteration=54, var_wn=0.0783313
+fixed_point_iteration:Iteration=55, var_wn=0.0780375
+fixed_point_iteration:Iteration=56, var_wn=0.0777565
+fixed_point_iteration:Iteration=57, var_wn=0.0774875
+fixed_point_iteration:Iteration=58, var_wn=0.0772301
+fixed_point_iteration:Iteration=59, var_wn=0.0769836
+fixed_point_iteration:Iteration=60, var_wn=0.0767475
+fixed_point_iteration:Iteration=61, var_wn=0.0765213
+fixed_point_iteration:Iteration=62, var_wn=0.0763044
+fixed_point_iteration:Iteration=63, var_wn=0.0760964
+fixed_point_iteration:Iteration=64, var_wn=0.0758969
+fixed_point_iteration:Iteration=65, var_wn=0.0757056
+fixed_point_iteration:Iteration=66, var_wn=0.075522
+fixed_point_iteration:Iteration=67, var_wn=0.0753457
+fixed_point_iteration:Iteration=68, var_wn=0.0751764
+fixed_point_iteration:Iteration=69, var_wn=0.0750139
+fixed_point_iteration:Iteration=70, var_wn=0.0748578
+fixed_point_iteration:Iteration=71, var_wn=0.0747078
+fixed_point_iteration:Iteration=72, var_wn=0.0745637
+fixed_point_iteration:Iteration=73, var_wn=0.0744251
+fixed_point_iteration:Iteration=74, var_wn=0.0742919
+fixed_point_iteration:Iteration=75, var_wn=0.0741639
+fixed_point_iteration:Iteration=76, var_wn=0.0740407
+fixed_point_iteration:Iteration=77, var_wn=0.0739223
+fixed_point_iteration:Iteration=78, var_wn=0.0738083
+fixed_point_iteration:Iteration=79, var_wn=0.0736987
+fixed_point_iteration:Iteration=80, var_wn=0.0735932
+fixed_point_iteration:Iteration=81, var_wn=0.0734916
+fixed_point_iteration:Iteration=82, var_wn=0.0733939
+fixed_point_iteration:Iteration=83, var_wn=0.0732998
+fixed_point_iteration:Iteration=84, var_wn=0.0732091
+fixed_point_iteration:Iteration=85, var_wn=0.0731219
+fixed_point_iteration:Iteration=86, var_wn=0.0730379
+fixed_point_iteration:Iteration=87, var_wn=0.0729569
+fixed_point_iteration:Iteration=88, var_wn=0.072879
+fixed_point_iteration:Iteration=89, var_wn=0.0728038
+fixed_point_iteration:Iteration=90, var_wn=0.0727315
+fixed_point_iteration:Iteration=91, var_wn=0.0726617
+fixed_point_iteration:Iteration=92, var_wn=0.0725945
+fixed_point_iteration:Iteration=93, var_wn=0.0725298
+fixed_point_iteration:Iteration=94, var_wn=0.0724673
+fixed_point_iteration:Iteration=95, var_wn=0.0724072
+fixed_point_iteration:Iteration=96, var_wn=0.0723491
+fixed_point_iteration:Iteration=97, var_wn=0.0722932
+fixed_point_iteration:Iteration=98, var_wn=0.0722393
+fixed_point_iteration:Iteration=99, var_wn=0.0721873
+fixed_point_iteration:Iteration=100, var_wn=0.0721372
+fixed_point_iteration:Iteration=101, var_wn=0.0720888
+fixed_point_iteration:Iteration=102, var_wn=0.0720422
+fixed_point_iteration:Iteration=103, var_wn=0.0719972
+fixed_point_iteration:Iteration=104, var_wn=0.0719538
+fixed_point_iteration:Iteration=105, var_wn=0.0719119
+fixed_point_iteration:Iteration=106, var_wn=0.0718716
+fixed_point_iteration:Iteration=107, var_wn=0.0718326
+fixed_point_iteration:Iteration=108, var_wn=0.0717951
+fixed_point_iteration:Iteration=109, var_wn=0.0717588
+fixed_point_iteration:Iteration=110, var_wn=0.0717238
+fixed_point_iteration:Iteration=111, var_wn=0.0716901
+fixed_point_iteration:Iteration=112, var_wn=0.0716575
+fixed_point_iteration:Iteration=113, var_wn=0.0716261
+fixed_point_iteration:Iteration=114, var_wn=0.0715957
+fixed_point_iteration:Iteration=115, var_wn=0.0715664
+fixed_point_iteration:Iteration=116, var_wn=0.0715382
+fixed_point_iteration:Iteration=117, var_wn=0.0715109
+fixed_point_iteration:Iteration=118, var_wn=0.0714846
+fixed_point_iteration:Iteration=119, var_wn=0.0714592
+fixed_point_iteration:Iteration=120, var_wn=0.0714347
+fixed_point_iteration:Iteration=121, var_wn=0.071411
+fixed_point_iteration:Iteration=122, var_wn=0.0713881
+fixed_point_iteration:Iteration=123, var_wn=0.0713661
+fixed_point_iteration:Iteration=124, var_wn=0.0713448
+fixed_point_iteration:Iteration=125, var_wn=0.0713242
+fixed_point_iteration:Iteration=126, var_wn=0.0713044
+fixed_point_iteration:Iteration=127, var_wn=0.0712852
+fixed_point_iteration:Iteration=128, var_wn=0.0712667
+fixed_point_iteration:Iteration=129, var_wn=0.0712488
+fixed_point_iteration:Iteration=130, var_wn=0.0712316
+fixed_point_iteration:Iteration=131, var_wn=0.0712149
+fixed_point_iteration:Iteration=132, var_wn=0.0711988
+fixed_point_iteration:Iteration=133, var_wn=0.0711833
+fixed_point_iteration:Iteration=134, var_wn=0.0711683
+fixed_point_iteration:Iteration=135, var_wn=0.0711538
+fixed_point_iteration:Iteration=136, var_wn=0.0711398
+fixed_point_iteration:Iteration=137, var_wn=0.0711263
+fixed_point_iteration:Iteration=138, var_wn=0.0711133
+fixed_point_iteration:Iteration=139, var_wn=0.0711007
+fixed_point_iteration:Iteration=140, var_wn=0.0710885
+fixed_point_iteration:Iteration=141, var_wn=0.0710768
+fixed_point_iteration:Iteration=142, var_wn=0.0710654
+fixed_point_iteration:Iteration=143, var_wn=0.0710545
+fixed_point_iteration:Iteration=144, var_wn=0.0710439
+fixed_point_iteration:Iteration=145, var_wn=0.0710337
+fixed_point_iteration:Iteration=146, var_wn=0.0710238
+WN variance = 0.0710238
+Partition size = (34,13,13)
+
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+'zeta.csv' -> 'zeta-none.csv'
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-gramcharlier
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = MA
+Verification scheme = manual
+MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = dist=gram_charlier,skewness=2.25,kurtosis=0.4,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
+err = 0.999006
+err = 0.171001
+err = 0.25565
+err = 0.275353
+err = 6.34477e+26
+err = 7.61373e+26
+err = 4.86898e+32
+err = 4.86898e+32
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03444e+34
+err = 7.03447e+34
+err = 7.03447e+34
+err = 7.03807e+34
+err = 7.03808e+34
+err = 7.26744e+34
+trim = 2
+ACF variance = 1
+fixed_point_iteration:Iteration=0, var_wn=0.541662
+fixed_point_iteration:Iteration=1, var_wn=0.387581
+fixed_point_iteration:Iteration=2, var_wn=0.309602
+fixed_point_iteration:Iteration=3, var_wn=0.262404
+fixed_point_iteration:Iteration=4, var_wn=0.230656
+fixed_point_iteration:Iteration=5, var_wn=0.207721
+fixed_point_iteration:Iteration=6, var_wn=0.190288
+fixed_point_iteration:Iteration=7, var_wn=0.176535
+fixed_point_iteration:Iteration=8, var_wn=0.165376
+fixed_point_iteration:Iteration=9, var_wn=0.156125
+fixed_point_iteration:Iteration=10, var_wn=0.148322
+fixed_point_iteration:Iteration=11, var_wn=0.141649
+fixed_point_iteration:Iteration=12, var_wn=0.135875
+fixed_point_iteration:Iteration=13, var_wn=0.130829
+fixed_point_iteration:Iteration=14, var_wn=0.126382
+fixed_point_iteration:Iteration=15, var_wn=0.122434
+fixed_point_iteration:Iteration=16, var_wn=0.118905
+fixed_point_iteration:Iteration=17, var_wn=0.115733
+fixed_point_iteration:Iteration=18, var_wn=0.112867
+fixed_point_iteration:Iteration=19, var_wn=0.110265
+fixed_point_iteration:Iteration=20, var_wn=0.107894
+fixed_point_iteration:Iteration=21, var_wn=0.105725
+fixed_point_iteration:Iteration=22, var_wn=0.103733
+fixed_point_iteration:Iteration=23, var_wn=0.101899
+fixed_point_iteration:Iteration=24, var_wn=0.100206
+fixed_point_iteration:Iteration=25, var_wn=0.0986382
+fixed_point_iteration:Iteration=26, var_wn=0.0971831
+fixed_point_iteration:Iteration=27, var_wn=0.0958297
+fixed_point_iteration:Iteration=28, var_wn=0.0945682
+fixed_point_iteration:Iteration=29, var_wn=0.0933903
+fixed_point_iteration:Iteration=30, var_wn=0.0922883
+fixed_point_iteration:Iteration=31, var_wn=0.0912558
+fixed_point_iteration:Iteration=32, var_wn=0.0902869
+fixed_point_iteration:Iteration=33, var_wn=0.0893763
+fixed_point_iteration:Iteration=34, var_wn=0.0885194
+fixed_point_iteration:Iteration=35, var_wn=0.087712
+fixed_point_iteration:Iteration=36, var_wn=0.0869503
+fixed_point_iteration:Iteration=37, var_wn=0.086231
+fixed_point_iteration:Iteration=38, var_wn=0.085551
+fixed_point_iteration:Iteration=39, var_wn=0.0849075
+fixed_point_iteration:Iteration=40, var_wn=0.0842979
+fixed_point_iteration:Iteration=41, var_wn=0.0837201
+fixed_point_iteration:Iteration=42, var_wn=0.0831718
+fixed_point_iteration:Iteration=43, var_wn=0.0826511
+fixed_point_iteration:Iteration=44, var_wn=0.0821564
+fixed_point_iteration:Iteration=45, var_wn=0.0816859
+fixed_point_iteration:Iteration=46, var_wn=0.0812382
+fixed_point_iteration:Iteration=47, var_wn=0.0808119
+fixed_point_iteration:Iteration=48, var_wn=0.0804057
+fixed_point_iteration:Iteration=49, var_wn=0.0800185
+fixed_point_iteration:Iteration=50, var_wn=0.0796491
+fixed_point_iteration:Iteration=51, var_wn=0.0792966
+fixed_point_iteration:Iteration=52, var_wn=0.07896
+fixed_point_iteration:Iteration=53, var_wn=0.0786385
+fixed_point_iteration:Iteration=54, var_wn=0.0783313
+fixed_point_iteration:Iteration=55, var_wn=0.0780375
+fixed_point_iteration:Iteration=56, var_wn=0.0777565
+fixed_point_iteration:Iteration=57, var_wn=0.0774875
+fixed_point_iteration:Iteration=58, var_wn=0.0772301
+fixed_point_iteration:Iteration=59, var_wn=0.0769836
+fixed_point_iteration:Iteration=60, var_wn=0.0767475
+fixed_point_iteration:Iteration=61, var_wn=0.0765213
+fixed_point_iteration:Iteration=62, var_wn=0.0763044
+fixed_point_iteration:Iteration=63, var_wn=0.0760964
+fixed_point_iteration:Iteration=64, var_wn=0.0758969
+fixed_point_iteration:Iteration=65, var_wn=0.0757056
+fixed_point_iteration:Iteration=66, var_wn=0.075522
+fixed_point_iteration:Iteration=67, var_wn=0.0753457
+fixed_point_iteration:Iteration=68, var_wn=0.0751764
+fixed_point_iteration:Iteration=69, var_wn=0.0750139
+fixed_point_iteration:Iteration=70, var_wn=0.0748578
+fixed_point_iteration:Iteration=71, var_wn=0.0747078
+fixed_point_iteration:Iteration=72, var_wn=0.0745637
+fixed_point_iteration:Iteration=73, var_wn=0.0744251
+fixed_point_iteration:Iteration=74, var_wn=0.0742919
+fixed_point_iteration:Iteration=75, var_wn=0.0741639
+fixed_point_iteration:Iteration=76, var_wn=0.0740407
+fixed_point_iteration:Iteration=77, var_wn=0.0739223
+fixed_point_iteration:Iteration=78, var_wn=0.0738083
+fixed_point_iteration:Iteration=79, var_wn=0.0736987
+fixed_point_iteration:Iteration=80, var_wn=0.0735932
+fixed_point_iteration:Iteration=81, var_wn=0.0734916
+fixed_point_iteration:Iteration=82, var_wn=0.0733939
+fixed_point_iteration:Iteration=83, var_wn=0.0732998
+fixed_point_iteration:Iteration=84, var_wn=0.0732091
+fixed_point_iteration:Iteration=85, var_wn=0.0731219
+fixed_point_iteration:Iteration=86, var_wn=0.0730379
+fixed_point_iteration:Iteration=87, var_wn=0.0729569
+fixed_point_iteration:Iteration=88, var_wn=0.072879
+fixed_point_iteration:Iteration=89, var_wn=0.0728038
+fixed_point_iteration:Iteration=90, var_wn=0.0727315
+fixed_point_iteration:Iteration=91, var_wn=0.0726617
+fixed_point_iteration:Iteration=92, var_wn=0.0725945
+fixed_point_iteration:Iteration=93, var_wn=0.0725298
+fixed_point_iteration:Iteration=94, var_wn=0.0724673
+fixed_point_iteration:Iteration=95, var_wn=0.0724072
+fixed_point_iteration:Iteration=96, var_wn=0.0723491
+fixed_point_iteration:Iteration=97, var_wn=0.0722932
+fixed_point_iteration:Iteration=98, var_wn=0.0722393
+fixed_point_iteration:Iteration=99, var_wn=0.0721873
+fixed_point_iteration:Iteration=100, var_wn=0.0721372
+fixed_point_iteration:Iteration=101, var_wn=0.0720888
+fixed_point_iteration:Iteration=102, var_wn=0.0720422
+fixed_point_iteration:Iteration=103, var_wn=0.0719972
+fixed_point_iteration:Iteration=104, var_wn=0.0719538
+fixed_point_iteration:Iteration=105, var_wn=0.0719119
+fixed_point_iteration:Iteration=106, var_wn=0.0718716
+fixed_point_iteration:Iteration=107, var_wn=0.0718326
+fixed_point_iteration:Iteration=108, var_wn=0.0717951
+fixed_point_iteration:Iteration=109, var_wn=0.0717588
+fixed_point_iteration:Iteration=110, var_wn=0.0717238
+fixed_point_iteration:Iteration=111, var_wn=0.0716901
+fixed_point_iteration:Iteration=112, var_wn=0.0716575
+fixed_point_iteration:Iteration=113, var_wn=0.0716261
+fixed_point_iteration:Iteration=114, var_wn=0.0715957
+fixed_point_iteration:Iteration=115, var_wn=0.0715664
+fixed_point_iteration:Iteration=116, var_wn=0.0715382
+fixed_point_iteration:Iteration=117, var_wn=0.0715109
+fixed_point_iteration:Iteration=118, var_wn=0.0714846
+fixed_point_iteration:Iteration=119, var_wn=0.0714592
+fixed_point_iteration:Iteration=120, var_wn=0.0714347
+fixed_point_iteration:Iteration=121, var_wn=0.071411
+fixed_point_iteration:Iteration=122, var_wn=0.0713881
+fixed_point_iteration:Iteration=123, var_wn=0.0713661
+fixed_point_iteration:Iteration=124, var_wn=0.0713448
+fixed_point_iteration:Iteration=125, var_wn=0.0713242
+fixed_point_iteration:Iteration=126, var_wn=0.0713044
+fixed_point_iteration:Iteration=127, var_wn=0.0712852
+fixed_point_iteration:Iteration=128, var_wn=0.0712667
+fixed_point_iteration:Iteration=129, var_wn=0.0712488
+fixed_point_iteration:Iteration=130, var_wn=0.0712316
+fixed_point_iteration:Iteration=131, var_wn=0.0712149
+fixed_point_iteration:Iteration=132, var_wn=0.0711988
+fixed_point_iteration:Iteration=133, var_wn=0.0711833
+fixed_point_iteration:Iteration=134, var_wn=0.0711683
+fixed_point_iteration:Iteration=135, var_wn=0.0711538
+fixed_point_iteration:Iteration=136, var_wn=0.0711398
+fixed_point_iteration:Iteration=137, var_wn=0.0711263
+fixed_point_iteration:Iteration=138, var_wn=0.0711133
+fixed_point_iteration:Iteration=139, var_wn=0.0711007
+fixed_point_iteration:Iteration=140, var_wn=0.0710885
+fixed_point_iteration:Iteration=141, var_wn=0.0710768
+fixed_point_iteration:Iteration=142, var_wn=0.0710654
+fixed_point_iteration:Iteration=143, var_wn=0.0710545
+fixed_point_iteration:Iteration=144, var_wn=0.0710439
+fixed_point_iteration:Iteration=145, var_wn=0.0710337
+fixed_point_iteration:Iteration=146, var_wn=0.0710238
+WN variance = 0.0710238
+Partition size = (34,13,13)
+
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+'zeta.csv' -> 'zeta-gramcharlier.csv'
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-propagating-skewnormal
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = MA
+Verification scheme = manual
+MA model = order=(20,10,10),acf.shape=(20,10,10),algorithm=fixed_point_iteration
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = dist=skew_normal,mean=0,stdev=1,alpha=1,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+err = inf
+trim = 0
+ACF variance = 1
+fixed_point_iteration:Iteration=0, var_wn=0.541662
+fixed_point_iteration:Iteration=1, var_wn=0.387581
+fixed_point_iteration:Iteration=2, var_wn=0.309602
+fixed_point_iteration:Iteration=3, var_wn=0.262404
+fixed_point_iteration:Iteration=4, var_wn=0.230656
+fixed_point_iteration:Iteration=5, var_wn=0.207721
+fixed_point_iteration:Iteration=6, var_wn=0.190288
+fixed_point_iteration:Iteration=7, var_wn=0.176535
+fixed_point_iteration:Iteration=8, var_wn=0.165376
+fixed_point_iteration:Iteration=9, var_wn=0.156125
+fixed_point_iteration:Iteration=10, var_wn=0.148322
+fixed_point_iteration:Iteration=11, var_wn=0.141649
+fixed_point_iteration:Iteration=12, var_wn=0.135875
+fixed_point_iteration:Iteration=13, var_wn=0.130829
+fixed_point_iteration:Iteration=14, var_wn=0.126382
+fixed_point_iteration:Iteration=15, var_wn=0.122434
+fixed_point_iteration:Iteration=16, var_wn=0.118905
+fixed_point_iteration:Iteration=17, var_wn=0.115733
+fixed_point_iteration:Iteration=18, var_wn=0.112867
+fixed_point_iteration:Iteration=19, var_wn=0.110265
+fixed_point_iteration:Iteration=20, var_wn=0.107894
+fixed_point_iteration:Iteration=21, var_wn=0.105725
+fixed_point_iteration:Iteration=22, var_wn=0.103733
+fixed_point_iteration:Iteration=23, var_wn=0.101899
+fixed_point_iteration:Iteration=24, var_wn=0.100206
+fixed_point_iteration:Iteration=25, var_wn=0.0986382
+fixed_point_iteration:Iteration=26, var_wn=0.0971831
+fixed_point_iteration:Iteration=27, var_wn=0.0958297
+fixed_point_iteration:Iteration=28, var_wn=0.0945682
+fixed_point_iteration:Iteration=29, var_wn=0.0933903
+fixed_point_iteration:Iteration=30, var_wn=0.0922883
+fixed_point_iteration:Iteration=31, var_wn=0.0912558
+fixed_point_iteration:Iteration=32, var_wn=0.0902869
+fixed_point_iteration:Iteration=33, var_wn=0.0893763
+fixed_point_iteration:Iteration=34, var_wn=0.0885194
+fixed_point_iteration:Iteration=35, var_wn=0.087712
+fixed_point_iteration:Iteration=36, var_wn=0.0869503
+fixed_point_iteration:Iteration=37, var_wn=0.086231
+fixed_point_iteration:Iteration=38, var_wn=0.085551
+fixed_point_iteration:Iteration=39, var_wn=0.0849075
+fixed_point_iteration:Iteration=40, var_wn=0.0842979
+fixed_point_iteration:Iteration=41, var_wn=0.0837201
+fixed_point_iteration:Iteration=42, var_wn=0.0831718
+fixed_point_iteration:Iteration=43, var_wn=0.0826511
+fixed_point_iteration:Iteration=44, var_wn=0.0821564
+fixed_point_iteration:Iteration=45, var_wn=0.0816859
+fixed_point_iteration:Iteration=46, var_wn=0.0812382
+fixed_point_iteration:Iteration=47, var_wn=0.0808119
+fixed_point_iteration:Iteration=48, var_wn=0.0804057
+fixed_point_iteration:Iteration=49, var_wn=0.0800185
+fixed_point_iteration:Iteration=50, var_wn=0.0796491
+fixed_point_iteration:Iteration=51, var_wn=0.0792966
+fixed_point_iteration:Iteration=52, var_wn=0.07896
+fixed_point_iteration:Iteration=53, var_wn=0.0786385
+fixed_point_iteration:Iteration=54, var_wn=0.0783313
+fixed_point_iteration:Iteration=55, var_wn=0.0780375
+fixed_point_iteration:Iteration=56, var_wn=0.0777565
+fixed_point_iteration:Iteration=57, var_wn=0.0774875
+fixed_point_iteration:Iteration=58, var_wn=0.0772301
+fixed_point_iteration:Iteration=59, var_wn=0.0769836
+fixed_point_iteration:Iteration=60, var_wn=0.0767475
+fixed_point_iteration:Iteration=61, var_wn=0.0765213
+fixed_point_iteration:Iteration=62, var_wn=0.0763044
+fixed_point_iteration:Iteration=63, var_wn=0.0760964
+fixed_point_iteration:Iteration=64, var_wn=0.0758969
+fixed_point_iteration:Iteration=65, var_wn=0.0757056
+fixed_point_iteration:Iteration=66, var_wn=0.075522
+fixed_point_iteration:Iteration=67, var_wn=0.0753457
+fixed_point_iteration:Iteration=68, var_wn=0.0751764
+fixed_point_iteration:Iteration=69, var_wn=0.0750139
+fixed_point_iteration:Iteration=70, var_wn=0.0748578
+fixed_point_iteration:Iteration=71, var_wn=0.0747078
+fixed_point_iteration:Iteration=72, var_wn=0.0745637
+fixed_point_iteration:Iteration=73, var_wn=0.0744251
+fixed_point_iteration:Iteration=74, var_wn=0.0742919
+fixed_point_iteration:Iteration=75, var_wn=0.0741639
+fixed_point_iteration:Iteration=76, var_wn=0.0740407
+fixed_point_iteration:Iteration=77, var_wn=0.0739223
+fixed_point_iteration:Iteration=78, var_wn=0.0738083
+fixed_point_iteration:Iteration=79, var_wn=0.0736987
+fixed_point_iteration:Iteration=80, var_wn=0.0735932
+fixed_point_iteration:Iteration=81, var_wn=0.0734916
+fixed_point_iteration:Iteration=82, var_wn=0.0733939
+fixed_point_iteration:Iteration=83, var_wn=0.0732998
+fixed_point_iteration:Iteration=84, var_wn=0.0732091
+fixed_point_iteration:Iteration=85, var_wn=0.0731219
+fixed_point_iteration:Iteration=86, var_wn=0.0730379
+fixed_point_iteration:Iteration=87, var_wn=0.0729569
+fixed_point_iteration:Iteration=88, var_wn=0.072879
+fixed_point_iteration:Iteration=89, var_wn=0.0728038
+fixed_point_iteration:Iteration=90, var_wn=0.0727315
+fixed_point_iteration:Iteration=91, var_wn=0.0726617
+fixed_point_iteration:Iteration=92, var_wn=0.0725945
+fixed_point_iteration:Iteration=93, var_wn=0.0725298
+fixed_point_iteration:Iteration=94, var_wn=0.0724673
+fixed_point_iteration:Iteration=95, var_wn=0.0724072
+fixed_point_iteration:Iteration=96, var_wn=0.0723491
+fixed_point_iteration:Iteration=97, var_wn=0.0722932
+fixed_point_iteration:Iteration=98, var_wn=0.0722393
+fixed_point_iteration:Iteration=99, var_wn=0.0721873
+fixed_point_iteration:Iteration=100, var_wn=0.0721372
+fixed_point_iteration:Iteration=101, var_wn=0.0720888
+fixed_point_iteration:Iteration=102, var_wn=0.0720422
+fixed_point_iteration:Iteration=103, var_wn=0.0719972
+fixed_point_iteration:Iteration=104, var_wn=0.0719538
+fixed_point_iteration:Iteration=105, var_wn=0.0719119
+fixed_point_iteration:Iteration=106, var_wn=0.0718716
+fixed_point_iteration:Iteration=107, var_wn=0.0718326
+fixed_point_iteration:Iteration=108, var_wn=0.0717951
+fixed_point_iteration:Iteration=109, var_wn=0.0717588
+fixed_point_iteration:Iteration=110, var_wn=0.0717238
+fixed_point_iteration:Iteration=111, var_wn=0.0716901
+fixed_point_iteration:Iteration=112, var_wn=0.0716575
+fixed_point_iteration:Iteration=113, var_wn=0.0716261
+fixed_point_iteration:Iteration=114, var_wn=0.0715957
+fixed_point_iteration:Iteration=115, var_wn=0.0715664
+fixed_point_iteration:Iteration=116, var_wn=0.0715382
+fixed_point_iteration:Iteration=117, var_wn=0.0715109
+fixed_point_iteration:Iteration=118, var_wn=0.0714846
+fixed_point_iteration:Iteration=119, var_wn=0.0714592
+fixed_point_iteration:Iteration=120, var_wn=0.0714347
+fixed_point_iteration:Iteration=121, var_wn=0.071411
+fixed_point_iteration:Iteration=122, var_wn=0.0713881
+fixed_point_iteration:Iteration=123, var_wn=0.0713661
+fixed_point_iteration:Iteration=124, var_wn=0.0713448
+fixed_point_iteration:Iteration=125, var_wn=0.0713242
+fixed_point_iteration:Iteration=126, var_wn=0.0713044
+fixed_point_iteration:Iteration=127, var_wn=0.0712852
+fixed_point_iteration:Iteration=128, var_wn=0.0712667
+fixed_point_iteration:Iteration=129, var_wn=0.0712488
+fixed_point_iteration:Iteration=130, var_wn=0.0712316
+fixed_point_iteration:Iteration=131, var_wn=0.0712149
+fixed_point_iteration:Iteration=132, var_wn=0.0711988
+fixed_point_iteration:Iteration=133, var_wn=0.0711833
+fixed_point_iteration:Iteration=134, var_wn=0.0711683
+fixed_point_iteration:Iteration=135, var_wn=0.0711538
+fixed_point_iteration:Iteration=136, var_wn=0.0711398
+fixed_point_iteration:Iteration=137, var_wn=0.0711263
+fixed_point_iteration:Iteration=138, var_wn=0.0711133
+fixed_point_iteration:Iteration=139, var_wn=0.0711007
+fixed_point_iteration:Iteration=140, var_wn=0.0710885
+fixed_point_iteration:Iteration=141, var_wn=0.0710768
+fixed_point_iteration:Iteration=142, var_wn=0.0710654
+fixed_point_iteration:Iteration=143, var_wn=0.0710545
+fixed_point_iteration:Iteration=144, var_wn=0.0710439
+fixed_point_iteration:Iteration=145, var_wn=0.0710337
+fixed_point_iteration:Iteration=146, var_wn=0.0710238
+WN variance = 0.0710238
+Partition size = (34,13,13)
+
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+'zeta.csv' -> 'zeta-skewnormal.csv'
+NIT for standing waves
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-none
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = AR
+Verification scheme = manual
+AR model = order=(7,7,7),acf.shape=(10,10,10)
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = none
+ACF variance = 1
+WN variance = 0.000519022
+Partition size = (21,10,10)
+
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+Zeta size = (192,32,32)
+'zeta.csv' -> 'zeta-none.csv'
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-gramcharlier
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = AR
+Verification scheme = manual
+AR model = order=(7,7,7),acf.shape=(10,10,10)
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = dist=gram_charlier,skewness=3.25,kurtosis=2.4,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
+err = 0.995366
+err = 0.472576
+err = 0.608796
+err = 0.61584
+err = 0.639818
+err = 12.4501
+err = 9.45159e+10
+err = 1.08018e+11
+err = 3.05905e+13
+err = 3.39774e+13
+err = 1.70414e+14
+err = 1.82818e+14
+err = 1.83166e+14
+err = 2.11267e+25
+err = 9.15985e+25
+err = 2.75794e+29
+err = 2.79745e+29
+err = 3.63216e+31
+err = 3.64474e+31
+err = 2.32998e+33
+trim = 2
+ACF variance = 1
+WN variance = 0.000519022
+Partition size = (21,10,10)
+
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+Zeta size = (192,32,32)
+'zeta.csv' -> 'zeta-gramcharlier.csv'
+Input file = /home/igankevich/workspace/arma-thesis/config/nit-standing-skewnormal
+Output grid size = (200,40,40)
+Output grid patch size = (1,1,1)
+Model = AR
+Verification scheme = manual
+AR model = order=(7,7,7),acf.shape=(10,10,10)
+Velocity potential solver name = N4arma8velocity21High_amplitude_solverIdEE
+Velocity potential solver = wnmax=from (0,0) to (0,0.25) npoints (2,2),depth=12,domain=from (10,-12) to (10,3) npoints (1,128)
+NIT transform = dist=skew_normal,mean=0,stdev=1,alpha=1,interpolation_nodes=100,interpolation_order=12,gram_charlier_order=20
+err = 0.893011
+err = 0.269503
+err = 0.173329
+err = 0.0040605
+err = 2.82799e+09
+err = 4.3525e+25
+err = 4.3525e+25
+err = 7.2978e+33
+err = 2.7618e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+err = 3.06867e+44
+trim = 4
+ACF variance = 1
+WN variance = 0.000519022
+Partition size = (21,10,10)
+
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+Zeta size = (192,32,32)
+'zeta.csv' -> 'zeta-skewnormal.csv'
+#+end_example
+** Download arma-benchmarks data from repository
+#+begin_src sh :exports none :results verbatim
+set -e
+dir=build/arma-benchmarks
+mkdir -p $dir
+if ! test -d "$dir/.git"
+then
+ git clone https://github.com/igankevich/arma-benchmarks $dir
+fi
+cd $dir
+git checkout master
+git pull
+git checkout 1ed6679387f0b79d8495c8bf55a6b0b304347e48
+#+end_src
+
+#+RESULTS:
+: Ваша ветка обновлена в соответствии с «origin/master».
+: Already up-to-date.
